Factsheet for TraesCS1B01G124900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G107400.1	Wheat	plastid	99.32	99.32
TraesCS1A01G099500.2	Wheat	plastid	93.89	97.36
HORVU1Hr1G023060.8	Barley	plastid	95.93	96.91
Os05t0156700-01	Rice	plastid	35.65	90.13
Zm00001d009779_P002	Maize	plastid	87.27	87.86
EES19070	Sorghum	plastid	83.36	87.37
CDY32221	Canola	plastid	74.02	79.42
VIT_05s0077g01210.t01	Wine grape	plastid	76.74	79.16
CDY34436	Canola	plastid	73.51	79.01
Bra033540.1-P	Field mustard	plastid	75.04	78.51
AT4G16155.1	Thale cress	plastid	74.36	77.25
GSMUA_Achr3P12660_001	Banana	plastid	74.19	77.07
PGSC0003DMT400069988	Potato	cytosol	22.07	76.92
KRH02332	Soybean	endoplasmic reticulum, nucleus	74.19	76.67
KRH11978	Soybean	endoplasmic reticulum, nucleus	73.17	76.28
PGSC0003DMT400069799	Potato	mitochondrion, plastid	72.67	75.09
Solyc05g053100.2.1	Tomato	nucleus	72.67	74.96
KRH37006	Soybean	cytosol	41.6	72.27
CDX75895	Canola	plastid	75.55	72.12
CDX82387	Canola	plastid	75.55	72.01
Bra001645.1-P	Field mustard	plastid	75.38	71.84
AT3G16950.2	Thale cress	plastid	75.21	71.11
KRH50756	Soybean	endoplasmic reticulum, nucleus	75.04	70.27
GSMUA_Achr1P18490_001	Banana	plastid	32.43	67.25
Bra012738.1-P	Field mustard	peroxisome	21.73	61.54
CDX90541	Canola	extracellular, nucleus, peroxisome	21.56	61.06
CDY09711	Canola	plasma membrane	39.22	60.95
TraesCS1B01G131300.1	Wheat	mitochondrion	29.37	34.46
TraesCS1B01G084700.1	Wheat	mitochondrion	29.03	34.0
TraesCS4B01G278900.1	Wheat	plastid	26.99	28.91
TraesCS6B01G423100.1	Wheat	cytosol	22.92	27.16
TraesCS6B01G423000.1	Wheat	cytosol	21.05	24.7
CDX93023	Canola	cytosol, mitochondrion	2.21	19.12

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0045454
GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852
PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196
InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	EnsemblPlantsGene:TraesCS1B01G124900
EnsemblPlants:TraesCS1B01G124900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:151468155..151473653

Molecular Weight (calculated)

62081.6 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.022

Length

589 amino acids

Sequence
(BLAST)

001: MHSVSISASA SASAIASGGA RSKAAAGRRP GEIRFCGLRG DALACGSLRA SHAAAATRRA VLRAAASANG AAGSGDGFDY DLVIIGAGVG GHGAALHAVE
101: EGLKTAIIEG DVVGGTCVNR GCVPSKALLA VSGRMRELHD EHHMKSLGLQ VSSTGYDRQA VADHANNLAS KIRSNLTNSM KAMGVDILTG FGKIVGKQKV
201: RYGKVGFPEK EITAKNIIIA TGSVPFVPKG IEIDGKTVFT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFV EALDQLMPGF DPAIAKLAQR
301: VLINPRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEH KETLEVDAAL IATGRAPFTN GLGLENINVV TQRGFIPVDE RMQVTDADGN VVPNLFCIGD
401: ANGKLMLAHA ASAQGISVVE QISGRDHILN HLSIPAACFT HPEISMVGLT EPQAREKADN EGFEVSVVKT SFKANTKALA ENEGDGIAKM IYRPDTGEIL
501: GVHILGLHAA DLIHEASNAI ALGTRLQELK LAVHAHPTLS EVLDELFKAA KLQPKDGQER EPNHPPQPLL KVLSFITSLL SSPQRDRQP

Best Arabidopsis Sequence Match ( AT3G16950.2 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTGDAKIKL NTNQEDRKGR RRGGDDEKQP SVSKDLKDIS
601: TRPSSFFENI SVGVLSLLSL IFV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.