Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34436 | Canola | plastid | 91.71 | 94.89 |
| CDY32221 | Canola | plastid | 91.18 | 94.17 |
| Bra033540.1-P | Field mustard | plastid | 93.3 | 93.96 |
| PGSC0003DMT400069988 | Potato | cytosol | 25.4 | 85.21 |
| Os05t0156700-01 | Rice | plastid | 34.22 | 83.26 |
| VIT_05s0077g01210.t01 | Wine grape | plastid | 83.77 | 83.19 |
| PGSC0003DMT400007182 | Potato | extracellular | 82.89 | 82.46 |
| Solyc01g100360.2.1 | Tomato | plastid | 82.72 | 82.28 |
| KRH02332 | Soybean | endoplasmic reticulum, nucleus | 82.54 | 82.11 |
| KRH11978 | Soybean | endoplasmic reticulum, nucleus | 81.13 | 81.42 |
| AT3G16950.2 | Thale cress | plastid | 88.71 | 80.74 |
| Os01t0337900-01 | Rice | plastid | 77.78 | 78.61 |
| EES19070 | Sorghum | plastid | 77.6 | 78.29 |
| KXG32441 | Sorghum | plastid | 77.07 | 77.9 |
| PGSC0003DMT400069799 | Potato | mitochondrion, plastid | 78.13 | 77.72 |
| Solyc05g053100.2.1 | Tomato | nucleus | 77.95 | 77.41 |
| TraesCS1A01G099500.2 | Wheat | plastid | 76.9 | 76.76 |
| KRH37006 | Soybean | cytosol | 45.33 | 75.81 |
| GSMUA_Achr3P12660_001 | Banana | plastid | 75.66 | 75.66 |
| KRH50756 | Soybean | endoplasmic reticulum, nucleus | 83.77 | 75.52 |
| VIT_14s0060g01330.t01 | Wine grape | plastid | 77.95 | 75.17 |
| TraesCS1D01G107400.1 | Wheat | plastid | 77.42 | 74.53 |
| Zm00001d009779_P002 | Maize | plastid | 76.9 | 74.53 |
| HORVU1Hr1G023060.8 | Barley | plastid | 76.54 | 74.44 |
| TraesCS1B01G124900.1 | Wheat | plastid | 77.25 | 74.36 |
| Zm00001d009212_P004 | Maize | extracellular | 77.07 | 71.17 |
| VIT_14s0060g01410.t01 | Wine grape | cytosol | 30.34 | 71.07 |
| Bra012738.1-P | Field mustard | peroxisome | 25.75 | 70.19 |
| CDX90541 | Canola | extracellular, nucleus, peroxisome | 25.4 | 69.23 |
| CDY09711 | Canola | plasma membrane | 46.21 | 69.13 |
| GSMUA_Achr1P18490_001 | Banana | plastid | 31.75 | 63.38 |
| AT1G48030.3 | Thale cress | mitochondrion | 30.69 | 34.32 |
| AT3G17240.1 | Thale cress | mitochondrion | 30.51 | 34.12 |
| AT3G54660.1 | Thale cress | plastid | 26.81 | 26.9 |
| AT3G24170.1 | Thale cress | cytosol | 22.22 | 25.25 |
| CDX93023 | Canola | cytosol, mitochondrion | 2.29 | 19.12 |
Protein Annotations
| Gene3D:3.30.390.30 | Gene3D:3.50.50.60 | MapMan:5.1.2.2.3 | EntrezGene:827307 | ProteinID:AEE83704.2 | EMBL:AF228638 |
| EMBL:AL161543 | ArrayExpress:AT4G16155 | EnsemblPlantsGene:AT4G16155 | RefSeq:AT4G16155 | TAIR:AT4G16155 | RefSeq:AT4G16155-TAIR-G |
| EnsemblPlants:AT4G16155.1 | TAIR:AT4G16155.1 | EMBL:AY050877 | EMBL:AY054195 | EMBL:AY113958 | UniProt:F4JLP5 |
| InterPro:FAD/NAD-bd_sf | InterPro:FAD/NAD-binding_dom | InterPro:FAD/NAD-linked_Rdtase_dimer_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004148 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016668 | GO:GO:0019725 |
| GO:GO:0022900 | GO:GO:0045454 | GO:GO:0046685 | GO:GO:0050660 | GO:GO:0055114 | InterPro:IPR016156 |
| InterPro:IPR036188 | RefSeq:NP_567487.5 | PFAM:PF02852 | PFAM:PF07992 | PIRSF:PIRSF000350 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00368 | PRINTS:PR00411 | ScanProsite:PS00076 | PANTHER:PTHR22912 | PANTHER:PTHR22912:SF196 | InterPro:Pyr_OxRdtase_I_AS |
| InterPro:Pyr_nuc-diS_OxRdtase | InterPro:Pyr_nucl-diS_OxRdtase_dimer | SUPFAM:SSF51905 | SUPFAM:SSF55424 | UniParc:UPI00000A3009 | EMBL:Z97340 |
| SEG:seg | : | : | : | : | : |
Description
LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
Coordinates
chr4:-:9153570..9157133
Molecular Weight (calculated)
60148.5 Da
IEP (calculated)
7.662
GRAVY (calculated)
0.026
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.