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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:
  • plastid 8
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 21132161
endoplasmic reticulum: 27224218
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH02332 Soybean endoplasmic reticulum, nucleus 88.67 87.89
PGSC0003DMT400069988 Potato cytosol 26.02 86.98
Os05t0156700-01 Rice plastid 35.75 86.7
KRH37006 Soybean cytosol 50.27 83.78
VIT_05s0077g01210.t01 Wine grape plastid 84.42 83.54
CDY32221 Canola plastid 81.06 83.42
CDY34436 Canola plastid 80.18 82.66
Bra033540.1-P Field mustard plastid 82.3 82.59
AT4G16155.1 Thale cress plastid 81.42 81.13
KRH50756 Soybean endoplasmic reticulum, nucleus 89.03 79.97
PGSC0003DMT400069799 Potato mitochondrion, plastid 80.53 79.82
Solyc05g053100.2.1 Tomato nucleus 79.82 78.98
Os01t0337900-01 Rice plastid 78.23 78.79
KXG32441 Sorghum plastid 77.52 78.07
EES19070 Sorghum plastid 77.35 77.76
GSMUA_Achr3P12660_001 Banana plastid 77.17 76.9
TraesCS1A01G099500.2 Wheat plastid 76.11 75.7
CDX75895 Canola plastid 81.77 74.88
CDX82387 Canola plastid 81.59 74.6
Zm00001d009779_P002 Maize plastid 77.17 74.53
Bra001645.1-P Field mustard plastid 81.42 74.43
AT3G16950.2 Thale cress plastid 81.59 74.0
TraesCS1D01G107400.1 Wheat plastid 76.28 73.17
TraesCS1B01G124900.1 Wheat plastid 76.28 73.17
HORVU1Hr1G023060.8 Barley plastid 75.4 73.07
Zm00001d009212_P004 Maize extracellular 77.17 71.01
CDY09711 Canola plasma membrane 43.36 64.64
Bra012738.1-P Field mustard peroxisome 23.72 64.42
CDX90541 Canola extracellular, nucleus, peroxisome 23.54 63.94
GSMUA_Achr1P18490_001 Banana plastid 32.04 63.73
KRH50629 Soybean mitochondrion 30.44 34.4
KRH02419 Soybean mitochondrion 30.09 34.0
KRH32102 Soybean plastid 27.61 28.62
KRH71329 Soybean plastid 27.43 28.44
KRH08536 Soybean cytosol 24.78 27.94
KRH70193 Soybean cytosol, nucleus 24.07 27.15
KRH71332 Soybean cytosol 5.49 25.0
CDX93023 Canola cytosol, mitochondrion 2.3 19.12
Protein Annotations
KEGG:00010+1.8.1.4KEGG:00020+1.8.1.4KEGG:00260+1.8.1.4KEGG:00280+1.8.1.4KEGG:00620+1.8.1.4KEGG:00640+1.8.1.4
EntrezGene:100803176Gene3D:3.30.390.30Gene3D:3.50.50.60MapMan:5.1.2.2.3EMBL:ACUP02009258InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_domInterPro:FAD/NAD-linked_Rdtase_dimer_sfEnsemblPlantsGene:GLYMA_15G143100GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004148GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0016491GO:GO:0016668GO:GO:0019725
GO:GO:0022900GO:GO:0045454GO:GO:0050660GO:GO:0055114UniProt:I1MGG7InterPro:IPR016156
InterPro:IPR036188EnsemblPlants:KRH11978ProteinID:KRH11978ProteinID:KRH11978.1InterPro:Lipoamide_DHPFAM:PF02852
PFAM:PF07992PIRSF:PIRSF000350PRINTS:PR00368PRINTS:PR00411ScanProsite:PS00076PANTHER:PTHR22912
PANTHER:PTHR22912:SF196MetaCyc:PWY-5046MetaCyc:PWY-5084InterPro:Pyr_OxRdtase_I_ASInterPro:Pyr_nuc-diS_OxRdtaseInterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905SUPFAM:SSF55424TIGRFAMs:TIGR01350UniParc:UPI000233BCEASEG:seg:
Description
hypothetical protein
Coordinates
chr15:+:11744760..11750567
Molecular Weight (calculated)
60175.3 Da
IEP (calculated)
7.386
GRAVY (calculated)
-0.001
Length
565 amino acids
Sequence
(BLAST)
001: MQSSISLSSS YAPTISGPRH SFPLSGRTLA PSNLRFCGLR RQAFTSTPLN HHFRLRRRRL PHSAAVSAAL SANGTSPKSF DYDLLIIGAG VGGHGAALHA
101: VEKGLKTAIV EGDVVGGTCV NRGCVPSKAL LAVSGRMREL RNDHHLKSLG LQVSAAEYDR QAVADHANNL ASKIRGNLTN SLKALGVDIL TGFGTILGPQ
201: KVKVVSSNNV VTAKDIIIAT GSVPFVPKGI EVDGKTVITS DHALKLETVP DWIAIVGSGY IGLEFSDVYT ALGSEVTFIE ALDQLMPGFD PEISKLAQRV
301: LINPRNIDYH TGVFASKITP ARDGKPVTIE LIDAKTKEQK DTLEVDAALI ATGRAPFTQG LGLENIDVVT QRGFVPVDER MRVLDANGNL VPHLYCIGDA
401: NGKMMLAHAA SAQGISVVEQ VTGRDHVLNH LSIPAACFTH PEISMVGLTE PQAREKAEKE GFEVSVAKTS FKANTKALAE NEGEGLAKLI YRPDTGEILG
501: VHIFGLHAAD LIHEASNAIA LGTRIQDIKF AVHAHPTLSE VLDELFKSAK VKAEASEPIK EAVAV
Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)
001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV
Arabidopsis Description
LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.