CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02332	Soybean	endoplasmic reticulum, nucleus	87.12	96.14
KRH11978	Soybean	endoplasmic reticulum, nucleus	79.97	89.03
PGSC0003DMT400069988	Potato	cytosol	23.37	86.98
VIT_05s0077g01210.t01	Wine grape	plastid	77.58	85.46
Os05t0156700-01	Rice	plastid	31.64	85.41
CDY32221	Canola	plastid	73.93	84.7
CDY34436	Canola	plastid	73.77	84.67
Bra033540.1-P	Field mustard	plastid	75.2	84.01
AT4G16155.1	Thale cress	plastid	75.52	83.77
KRH37006	Soybean	cytosol	43.56	80.83
PGSC0003DMT400069799	Potato	mitochondrion, plastid	72.5	80.0
EES19070	Sorghum	plastid	71.22	79.72
Solyc05g053100.2.1	Tomato	nucleus	72.34	79.68
Os01t0337900-01	Rice	plastid	70.59	79.14
KXG32441	Sorghum	plastid	69.95	78.43
GSMUA_Achr3P12660_001	Banana	plastid	70.27	77.95
CDX82387	Canola	plastid	76.15	77.51
CDX75895	Canola	plastid	75.99	77.47
Bra001645.1-P	Field mustard	plastid	75.99	77.35
AT3G16950.2	Thale cress	plastid	76.15	76.89
TraesCS1A01G099500.2	Wheat	plastid	69.32	76.76
Zm00001d009779_P002	Maize	plastid	70.59	75.9
TraesCS1D01G107400.1	Wheat	plastid	70.43	75.21
HORVU1Hr1G023060.8	Barley	plastid	69.63	75.13
TraesCS1B01G124900.1	Wheat	plastid	70.27	75.04
Zm00001d009212_P004	Maize	extracellular	69.79	71.5
Bra012738.1-P	Field mustard	peroxisome	22.26	67.31
CDX90541	Canola	extracellular, nucleus, peroxisome	22.1	66.83
CDY09711	Canola	plasma membrane	39.27	65.17
GSMUA_Achr1P18490_001	Banana	plastid	29.25	64.79
KRH50629	Soybean	mitochondrion	27.82	35.0
KRH02419	Soybean	mitochondrion	27.66	34.8
KRH08536	Soybean	cytosol	22.26	27.94
KRH71329	Soybean	plastid	24.17	27.89
KRH32102	Soybean	plastid	24.17	27.89
KRH70193	Soybean	cytosol, nucleus	21.78	27.35
KRH71332	Soybean	cytosol	4.77	24.19
CDX93023	Canola	cytosol, mitochondrion	2.23	20.59

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
EntrezGene:100809578	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	EMBL:ACUP02004715	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EnsemblPlantsGene:GLYMA_07G241600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	UniProt:I1KMS8	InterPro:IPR016156	InterPro:IPR036188	EnsemblPlants:KRH50756	ProteinID:KRH50756
ProteinID:KRH50756.1	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	MetaCyc:PWY-5046	MetaCyc:PWY-5084	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI0002338ABD	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:42168316..42174354

Molecular Weight (calculated)

67102.9 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.011

Length

629 amino acids

Sequence
(BLAST)

001: MHSSLSLSFS ATSSSAATVS RSRHSFHSPA VATPLNLRFC GLRREAFASG LAASRNRHHS HLPRRPRSAA VSAALSSNGI PPKSFDYDLL IIGAGVGGHG
101: AALHAVEKGL KTAIVEGDVV GGTCVNRGCV PSKALLAVSG RMRELKSDHH LKSFGLQVSA AGYDRQGVAD HANNLASKIR NNLTNSMKAL GVDILTGFGT
201: ILGPQKVKVG SSDKIVTAKD IIIATGSVPF VPKGIEIDGK TVITSDHALK LESVPDWIAI VGSGYIGLEF SDVYTALGSE VTFIEALDQL MPGFDPEISK
301: LAQRVLINPR NIDYHTGVFA TKITPARDGK PVLIELIDAK TKEPKDTLEV DAALIATGRA PFTQGLGLEN IDVVTQRGFV PVDERMRVID ANGKLVPHLY
401: CIGDANGKMM LAHAASAQGI SVVEQVTGRD LVLNHLSIPA ACFTHPEISM VGLTEPQARE KGEKEGFEVS VAKTSFKANT KALAENEGEG LAKLIYRPDN
501: GEILGVHIFG LHAADLIHEA SNAIALGTRI QDIKFAVHAH PTLSEVLDEL FKSAKVKAQA SSPGLPKYSS SGGRHKHIQN PVKEGNRLRE INNDLMMNNC
601: RSLHVMVSFL LGILSACQRC LCSLLQFLN

Best Arabidopsis Sequence Match ( AT3G16950.2 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTGDAKIKL NTNQEDRKGR RRGGDDEKQP SVSKDLKDIS
601: TRPSSFFENI SVGVLSLLSL IFV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.