Factsheet for PGSC0003DMT400069799

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053100.2.1	Tomato	nucleus	96.32	96.15
PGSC0003DMT400069988	Potato	cytosol	27.19	91.72
Os05t0156700-01	Rice	plastid	35.44	86.7
VIT_05s0077g01210.t01	Wine grape	plastid	83.68	83.54
KRH11978	Soybean	endoplasmic reticulum, nucleus	79.82	80.53
CDY32221	Canola	plastid	77.54	80.51
CDY34436	Canola	plastid	76.84	79.93
KRH02332	Soybean	endoplasmic reticulum, nucleus	79.47	79.47
Bra033540.1-P	Field mustard	plastid	78.42	79.4
PGSC0003DMT400007182	Potato	extracellular	79.12	79.12
AT4G16155.1	Thale cress	plastid	77.72	78.13
GSMUA_Achr3P12660_001	Banana	plastid	77.54	77.95
KXG32441	Sorghum	plastid	76.67	77.9
Os01t0337900-01	Rice	plastid	76.49	77.72
KRH37006	Soybean	cytosol	45.96	77.29
EES19070	Sorghum	plastid	75.79	76.87
TraesCS1A01G099500.2	Wheat	plastid	75.09	75.35
Zm00001d009779_P002	Maize	plastid	75.79	73.85
TraesCS1B01G124900.1	Wheat	plastid	75.09	72.67
KRH50756	Soybean	endoplasmic reticulum, nucleus	80.0	72.5
TraesCS1D01G107400.1	Wheat	plastid	74.91	72.5
HORVU1Hr1G023060.8	Barley	plastid	73.86	72.21
CDX75895	Canola	plastid	77.02	71.15
Bra001645.1-P	Field mustard	plastid	77.02	71.04
CDX82387	Canola	plastid	77.02	71.04
Zm00001d009212_P004	Maize	extracellular	76.14	70.68
AT3G16950.2	Thale cress	plastid	77.02	70.47
GSMUA_Achr1P18490_001	Banana	plastid	33.68	67.61
CDY09711	Canola	plasma membrane	43.33	65.17
Bra012738.1-P	Field mustard	peroxisome	22.81	62.5
CDX90541	Canola	extracellular, nucleus, peroxisome	22.63	62.02
PGSC0003DMT400069840	Potato	mitochondrion	30.88	35.2
PGSC0003DMT400011741	Potato	mitochondrion	30.35	34.33
PGSC0003DMT400076297	Potato	cytosol	19.3	28.65
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	26.67	27.34
CDX93023	Canola	cytosol, mitochondrion	2.28	19.12

Protein Annotations

EntrezGene:102599296	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	UniProt:M1CL70	PFAM:PF02852	PFAM:PF07992
EnsemblPlantsGene:PGSC0003DMG400027143	PGSC:PGSC0003DMG400027143	EnsemblPlants:PGSC0003DMT400069799	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI0002954275	RefSeq:XP_006355704.1	SEG:seg	:

Description

Dihydrolipoyl dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027143]

Coordinates

chr5:+:48335777..48345395

Molecular Weight (calculated)

61070.5 Da

IEP (calculated)

6.986

GRAVY (calculated)

-0.009

Length

570 amino acids

Sequence
(BLAST)

001: MHSSSVLSPP NCSLLKRSHR NQIEKLSLAP LKNLPFCGLR NEILAFEFSK LNRCEAQRVR NFLRNKIVSA SVAENGNAPT SFDYDLVIIG AGVGGHGAAL
101: HAVEKGLKTA IIEGDVIGGT CVNRGCVPSK ALLAVSGRMR ELKNEHHLKA LGIQVSGAGY DRQAVADHAN NLASKIRNNL TNSLKALGVD ILTGVGTITG
201: PQRVKYGKVG FSGSEVTARD IIIATGSVPF VPRGIEVDGK TVITSDHALK LEFVPEWIAI VGSGYIGLEF SDVYTALGSE VTFIEALDQL MPGFDPEISK
301: LAQRILVNPR KIDYHTGVFA TKITPAKDGR PVVIELTDAK TKEVKDTLEV DAALIATGRA PFTNGLGLEN INVLTQRGFI PVDERMRVVD ADGNLVPHLY
401: CIGDANGKMM LAHAASAQGI SVVEQVSGRD HVLNHLSIPA ACFTHPEISM VGLTEPQARE KAEKEGFEIS IAKTSFKANT KALAENEGEG LAKLIYRPDN
501: GEILGVHIFG MHAADLIHEA SNAIALGTSI QDIKFAVHAH PTLSEVLDEL FKSAKVTSHD HRPLSESVAV

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.