Factsheet for PGSC0003DMT400019491

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 10
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	PGSC0003DMT400042984	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065900.2.1	Tomato	plastid	96.58	96.41
KRH71329	Soybean	plastid	78.78	80.37
KRH32102	Soybean	plastid	78.6	80.18
VIT_07s0141g00390.t01	Wine grape	plastid	80.04	79.61
AT3G54660.1	Thale cress	plastid	77.34	76.11
CDY69892	Canola	plastid	75.36	74.56
CDX73461	Canola	plastid	75.18	74.51
Bra007087.1-P	Field mustard	plastid	75.18	74.25
GSMUA_Achr3P29340_001	Banana	plastid	73.56	73.17
TraesCS4D01G277400.1	Wheat	golgi	71.4	71.92
Os03t0163300-01	Rice	plastid	71.76	71.89
TraesCS4A01G025200.1	Wheat	golgi	70.86	71.64
Zm00001d027769_P001	Maize	plastid	70.68	71.45
TraesCS4B01G278900.1	Wheat	plastid	70.68	71.45
EER95455	Sorghum	plastid	70.14	70.91
CDY13217	Canola	plastid	74.1	68.44
CDX76141	Canola	plastid	73.02	67.11
CDX94793	Canola	endoplasmic reticulum	20.14	67.07
Bra014801.1-P	Field mustard	plastid	74.1	66.99
Os10t0415300-02	Rice	plastid	66.73	66.97
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	70.5	66.44
OQU91783	Sorghum	plastid	61.51	64.41
KRH71332	Soybean	cytosol	14.21	63.71
GSMUA_Achr9P21540_001	Banana	cytosol	16.01	55.62
PGSC0003DMT400076297	Potato	cytosol	35.43	51.3
PGSC0003DMT400007182	Potato	extracellular	27.34	26.67
PGSC0003DMT400069799	Potato	mitochondrion, plastid	27.34	26.67
PGSC0003DMT400069840	Potato	mitochondrion	23.92	26.6
PGSC0003DMT400011741	Potato	mitochondrion	23.38	25.79
PGSC0003DMT400069988	Potato	cytosol	7.01	23.08

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	EntrezGene:102581092	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004362
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	GO:GO:0098869
InterPro:Glut-diS_reduct	InterPro:IPR016156	InterPro:IPR036188	UniProt:M1AC63	PFAM:PF02852	PFAM:PF07992
EnsemblPlantsGene:PGSC0003DMG400007537	PGSC:PGSC0003DMG400007537	EnsemblPlants:PGSC0003DMT400019491	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01424	UniParc:UPI0002969FC0	RefSeq:XP_006349748.1	SEG:seg

Description

Glutathione reductase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400007537]

Coordinates

chr9:-:48830689..48837646

Molecular Weight (calculated)

60024.5 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.146

Length

556 amino acids

Sequence
(BLAST)

001: MATSLSSPKL STTLSSPTFH TFYRTKFSNF SLLSLSNPIK PLRFNFLTHP RTSSLSYGRR FTTTRAESSN GAETPRHYDF DLFTIGAGSG GVRASRFASN
101: FGASVAVCEL PFSTISSDST GGVGGTCVLR GCVPKKLLVY ASKYSHEFEE SCGFGWNYEA EPKHDWSILI ANKNAELQRL TGIYKNILKN ADVTLIEGRG
201: KVVDPHTVDV DGKLYSAKNI LISVGGRPFI PDIPGSEYAI DSDAALDLPT KPDKIAIVGG GYIALEFAGI FNGLKSEVHV FIRQKKVLRG FDEEIRDFVG
301: EQMSLRGIEF HTEESPQAIV KSADGSLSLK TNRGTVEGFS HIMFATGRSP NTKNLGLDTV GVKMTKNGAI EVDEYSRTSV PSIWAVGDVT DRINLTPVAL
401: MEGGALAKTI FAGEPTKPDY RNVPCAVFSQ PPIGLVGLTE EEAIKEYGDV DVYTANFRPL KATLSGLPDR AFMKLIVCSK TSKVLGLHMC GEDAPEIVQG
501: FAVAVKAGLT KADFDATVGI HPTAAEEFVT MRTPTRKVRS SPSEGSEHDT KAIAGV

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.