CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21581

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69892	Canola	plastid	98.75	98.58
AT3G54660.1	Thale cress	plastid	92.51	91.86
CDX93023	Canola	cytosol, mitochondrion	10.34	85.29
CDY13217	Canola	plastid	90.2	84.05
CDX76141	Canola	plastid	85.38	79.17
VIT_07s0141g00390.t01	Wine grape	plastid	77.9	78.18
CDX94793	Canola	endoplasmic reticulum	23.17	77.84
KRH32102	Soybean	plastid	74.87	77.06
KRH71329	Soybean	plastid	74.69	76.88
Solyc09g065900.2.1	Tomato	plastid	75.04	75.58
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	74.51	75.18
TraesCS4B01G278900.1	Wheat	plastid	70.41	71.82
GSMUA_Achr3P29340_001	Banana	plastid	71.48	71.74
TraesCS4D01G277400.1	Wheat	golgi	70.23	71.38
Os03t0163300-01	Rice	plastid	70.59	71.35
TraesCS4A01G025200.1	Wheat	golgi	69.88	71.27
Zm00001d027769_P001	Maize	plastid	68.98	70.36
EER95455	Sorghum	plastid	68.63	70.0
Os10t0415300-02	Rice	plastid	65.95	66.79
KRH71332	Soybean	cytosol	14.62	66.13
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	69.34	65.93
OQU91783	Sorghum	plastid	60.96	64.41
GSMUA_Achr9P21540_001	Banana	cytosol	16.04	56.25
CDX85155	Canola	cytosol	44.38	51.45
CDX77463	Canola	cytosol	44.38	51.23
CDX92998	Canola	cytosol	43.85	50.83
CDX94838	Canola	cytosol	45.63	48.39
CDX90541	Canola	extracellular, nucleus, peroxisome	11.05	29.81
CDY34436	Canola	plastid	27.09	27.74
CDY32221	Canola	plastid	26.56	27.14
CDX92121	Canola	mitochondrion	23.53	26.19
CDY20935	Canola	mitochondrion	23.53	26.04
CDX93639	Canola	mitochondrion	23.53	26.04
CDX95864	Canola	mitochondrion	23.35	25.89
CDX75895	Canola	plastid	27.63	25.12
CDX82387	Canola	plastid	27.63	25.08
CDY09711	Canola	plasma membrane	12.66	18.73

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	Gene3D:3.30.390.30	Gene3D:3.50.50.60	GO:A0A078C8R1	EnsemblPlants:CDX73461
ProteinID:CDX73461	ProteinID:CDX73461.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004362	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00108967001	InterPro:Glut-diS_reduct	InterPro:IPR016156	InterPro:IPR036188	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4
MetaCyc:PWY-4081	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424
TIGRFAMs:TIGR01424	UniParc:UPI0004EC463F	SEG:seg	:	:	:

Description

BnaC08g25420D

Coordinates

chrLK031799:+:524738..528219

Molecular Weight (calculated)

60537.2 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.183

Length

561 amino acids

Sequence
(BLAST)

001: MASTPKLTTT ISSSPSLQIL CRKLPIAINL PSSSTSRSLP KTLSHLSSLR PRVASVSNHR YYSSSRRFSV RAQNDNGADS DRHYDFDLFT IGAGSGGVRA
101: SRFATSYGAS AAVCELPFST ISSDTAGGVG GTCVLRGCVP KKLLVYASKY THEFEDSHGF GWKYDTEPSH DWSTLIANKN AELQRLTGIY KNILNNANVK
201: LIEGRGKVID PHTVDVDGKI YTTRNILIAV GGRPFIPDIP GREFAIDSDA ALDLPSKPKK IAIVGGGYIA LEFAGIFNGL NSEVHVFIRQ KKVLRGFDED
301: VRDFVGEQMS LRGIEFHTEE SPEAIIKAGD GSFSLKTSKG TVDGFSHVMF ATGRKPNTKN LGLENVGVKL AKNGAIEVDE YSRTSVPSIY AVGDVTDRIN
401: LTPVALMEGM ALAKTLFQND PTKPDYRAVP CAVFAQPPIG TVGLTEEQAI EQYGDIDVFT SNFKPLKATL SGLPDRVFMK LIVCANTNKV LGVHMCGEDS
501: PEIIQGFGVA VKAGLTKADF DATVGVHPTA AEEFVTMRTP TRKIRKESSE GKANVEAKTA V

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.