CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73461
CDX76141
CDX82267
CDX94793
CDY13217
CDY24571
CDY25368
CDY33440
CDY36066
CDY42223
CDY69892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	CDX82267	AT3G20000.1	17981999
AT5G09420.1	CDY24571	AT3G20000.1	17981999
AT5G09420.1	CDY25368	AT3G20000.1	17981999
AT5G09420.1	CDY33440	AT3G20000.1	17981999
AT5G09420.1	CDY36066	AT3G20000.1	17981999
AT5G09420.1	CDY42223	AT3G20000.1	17981999
AT5G09420.1	CDX73461	AT3G54660.1	17981999
AT5G09420.1	CDX76141	AT3G54660.1	17981999
AT5G09420.1	CDX94793	AT3G54660.1	17981999
AT5G09420.1	CDY13217	AT3G54660.1	17981999
AT5G09420.1	CDY69892	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69906	Canola	cytosol, plastid	96.52	96.52
AT5G09420.1	Thale cress	cytosol	85.74	85.74
VIT_12s0028g00300.t01	Wine grape	cytosol	66.5	66.06
KRH58264	Soybean	golgi, plasma membrane	34.66	64.51
KRH58262	Soybean	cytosol	29.52	64.03
KRH43896	Soybean	cytosol, endoplasmic reticulum	62.85	63.38
KRH10544	Soybean	golgi	62.85	63.38
Solyc10g047300.1.1	Tomato	plastid	62.52	63.04
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	34.66	62.76
Bra009383.1-P	Field mustard	cytosol, plastid	95.69	62.51
GSMUA_Achr9P14860_001	Banana	mitochondrion	60.03	58.11
TraesCS6B01G349000.1	Wheat	plastid	57.38	56.81
TraesCS6A01G318800.1	Wheat	plastid	57.05	56.49
TraesCS6D01G298000.1	Wheat	plastid	56.88	56.32
KXG30729	Sorghum	plastid	55.39	54.4
Zm00001d018098_P005	Maize	plasma membrane	54.56	53.58
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	53.57	52.69
CDY51926	Canola	endoplasmic reticulum	50.58	51.61
CDX75952	Canola	endoplasmic reticulum	50.41	51.53
HORVU6Hr1G078210.1	Barley	mitochondrion	47.1	50.9
CDX93679	Canola	mitochondrion	48.92	49.08
CDY40591	Canola	endoplasmic reticulum, golgi	48.09	48.33
CDY06342	Canola	cytosol	32.01	45.73
CDY22653	Canola	cytosol	31.01	44.31
CDX95800	Canola	endoplasmic reticulum	50.41	39.74
CDY03602	Canola	cytosol, plastid	19.9	39.22
CDX92180	Canola	endoplasmic reticulum	50.75	38.35
CDY46509	Canola	cytosol	6.63	22.1
CDY04173	Canola	plastid	15.59	17.47
CDY59872	Canola	plastid	15.59	17.47
CDX84527	Canola	cytosol	17.08	16.72
CDY58262	Canola	cytosol	16.58	16.23
CDY31318	Canola	cytosol	16.25	15.99
CDY46805	Canola	cytosol	16.09	15.88
CDX98979	Canola	plastid	16.58	15.41
CDX70030	Canola	plastid	16.25	15.15
CDX69905	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.2.1.7	Gene3D:3.90.1300.10	GO:A0A078G876	UniProt:A0A078G876
InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	EnsemblPlants:CDY21581	ProteinID:CDY21581	ProteinID:CDY21581.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006626	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00016044001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928	PFAM:PF00515	PFAM:PF01425	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	MetaCyc:PWY-5921	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF75304	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0004EDEAAF
SEG:seg	:	:	:	:	:

Description

BnaC09g47110DBnaC09g47110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G876]

Coordinates

chrLK032122:+:329792..333379

Molecular Weight (calculated)

65640.6 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.175

Length

603 amino acids

Sequence
(BLAST)

001: MSKSLTFIQT NASNPKTWVV IGVTVAGIVI LAETRKRRIK ALREEHFGAF LDRFELLPFP PPSPPAAKQT LSGLTFSISD AFDIKDYITG FGSPQWKKTH
101: EAAEKTAVVV TTLLINGATC VAKTVMDEMG FGITGENKHY GTPINPLMPS NVPGGCSSGS AVSVAAELVD FALGIDTTGG VRIPASFCGV LGFRPSQGTV
201: SSVGVLPNSQ SLETAGWFAR DPSVLCHVGH ALLNLSAVTH KRQRSLIFAD DLFELSDVPK QKSVHVVRKA IENLPGYQPP KHMNVGQYVA SNVPSLAEFC
301: EKSGTSQDSA SSLKALASVM LSIQRHEFKT NHEEWSQTCK SFLGPRFSSD VVTALKSRNE NIKSLYRVKT EMRATIQSLL KEDGILVIPT VADPPPKLNT
401: KNKDAVNEFL ERNYALSCTA SMSGCCQVTI PLGKHGESPI SVSFLAYYGG DKFLLDTILE VYASLQDQAD IAASLAPVND SNGIEPSEVM KEKGNAAYKG
501: RQWNKAVSCY TEAIKLNGAN ATYFCNRAAA YLELGRFQQA EEDCTEAILI DKKNVKAYLR RGTARESLIR YKESAADFKH ALVLEPQNKT AKIAEKRLRK
601: LMS

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.