CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94935
EER95455
KXG32258
OQU91783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	EER94935	AT3G20000.1	17981999
AT5G09420.1	KXG32258	AT3G20000.1	17981999
AT5G09420.1	EER95455	AT3G54660.1	17981999
AT5G09420.1	OQU91783	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018098_P005	Maize	plasma membrane	95.11	95.11
TraesCS6B01G349000.1	Wheat	plastid	77.52	78.16
TraesCS6D01G298000.1	Wheat	plastid	77.36	78.0
TraesCS6A01G318800.1	Wheat	plastid	77.2	77.83
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	75.73	75.86
HORVU6Hr1G078210.1	Barley	mitochondrion	63.52	69.89
VIT_12s0028g00300.t01	Wine grape	cytosol	59.28	59.97
GSMUA_Achr9P14860_001	Banana	mitochondrion	59.93	59.07
KRH10544	Soybean	golgi	57.0	58.53
KRH43896	Soybean	cytosol, endoplasmic reticulum	57.0	58.53
KRH58262	Soybean	cytosol	26.38	58.27
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	31.43	57.96
Solyc10g047300.1.1	Tomato	plastid	55.86	57.36
KRH58264	Soybean	golgi, plasma membrane	30.13	57.1
CDY21581	Canola	cytosol	54.4	55.39
AT5G09420.1	Thale cress	cytosol	54.23	55.22
EER91017	Sorghum	endoplasmic reticulum, golgi	43.97	45.92
EER97555	Sorghum	cytosol	29.8	41.88
Bra009383.1-P	Field mustard	cytosol, plastid	55.21	36.73
EES11532	Sorghum	plastid	15.47	17.56
EES11732	Sorghum	cytosol, nucleus, plastid	16.12	16.02
KXG23065	Sorghum	plastid	18.08	14.92
OQU82976	Sorghum	peroxisome	11.56	13.37
KXG28572	Sorghum	golgi	14.33	13.35

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.2.1.7	Gene3D:3.90.1300.10	UniProt:A0A194YR74	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006626	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:IPR036928	EnsemblPlants:KXG30729	ProteinID:KXG30729	ProteinID:KXG30729.1	PFAM:PF01425	PFAM:PF13414
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	MetaCyc:PWY-5921	SMART:SM00028
EnsemblPlantsGene:SORBI_3004G231600	SUPFAM:SSF48452	SUPFAM:SSF75304	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0007F20795	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:58075407..58083528

Molecular Weight (calculated)

66748.3 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.092

Length

614 amino acids

Sequence
(BLAST)

001: MASSSQSGGA GGGGTIASNP RVWIVAGIAV AGVIVLAEVA RRRRRWLRGM SGTPPDAGSF CDRFELHPPP QPPPPAARHL LSGLTFAASD NFEVEGYVAG
101: FGNPDWKNTH EAARHTAVAV TMLRKQGATC VGRTIMDELG FGVTGENLHH GTPANPVSPS LVPGGSCSGS AVAVAAQLVD FAIGTDTIGD VRIPASFCGL
201: LCFRPSYGVI STLGTIANSQ SLDTIGWFAR DPCILHRVGE VLLPTAAGGL KQTRQIVFAD DCFQLLKVSN QKTVHAIKNA VQALRGYQPP KHINIGQYIC
301: SNVPSLKEFC EPATKLQEGT SALKAISTVM LLLQRYEFKA NHEEWVNTVK PKLGLDISTR VLQAVNFAHE NIKSLYAVRN ELRAALKNLL KDTGILVLPT
401: TAGYPLKRNS KERLSSGFED RMYKFVGIAA LSGCCEVTIP MENLDHHVSL SFVAAHGLDK FLLHTVLDTY SLIQDQVVLA SKLETAPVTN VDIDVNASEL
501: LKEKGNSAFK RRQWSKAIEF YSEAISLSDT NATYYCNRAA AYLELGRLKQ VEGDCDRALL LDRKNVKAYL RRGCAREVTL NYKEALQDFR HALALEPQNK
601: TALAAERRLQ KLLK

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.