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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plastid 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 cytosol: 27135507
gfp PMID: 27135507 doi
B Sánchez-Parra, H Frerigmann, MM Alonso, VC Loba, R Jost, M Hentrich, S Pollmann
Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. beatriz.sanchez@upm.es., Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. martamarina.perez@upm.es., Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. stephan.pollmann@upm.es., Center for Plant Biotechnology and Genomics (U.P.M.-I.N.I.A.), Technical University Madrid, Montegancedo Campus, Crta. M-40, km 38, 28223 Pozuelo de Alarcón (Madrid), Spain. victorcarrascoloba@gmail.com., Department of Plant Physiology, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801 Bochum, Germany. henning.frerigmann@uni-koeln.de., Department of Plant Physiology, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801 Bochum, Germany. mathias.hentrich@rub.de., School of Plant Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia. ricarda.jost@uwa.edu.au.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d006886_P002 Maize cytosol 93.82 92.34
Os04t0118100-01 Rice cytosol 77.8 78.16
TraesCS2D01G573300.1 Wheat cytosol 77.12 75.06
TraesCS2B01G624200.1 Wheat cytosol 76.43 74.22
Os04t0117900-01 Rice plasma membrane, plastid 73.23 73.73
TraesCS2A01G562400.1 Wheat cytosol 75.29 72.15
TraesCS2B01G603900.1 Wheat cytosol 69.79 69.0
TraesCS5D01G083700.1 Wheat cytosol 46.45 67.44
TraesCS2D01G573400.3 Wheat cytosol, endoplasmic reticulum, peroxisome 65.9 66.51
VIT_14s0128g00320.t01 Wine grape cytosol 59.73 60.28
GSMUA_Achr3P09030_001 Banana cytosol, plasma membrane 57.21 59.81
KRG92836 Soybean cytosol 58.12 58.66
KRH33958 Soybean cytosol 57.67 58.2
Bra031652.1-P Field mustard cytosol 55.84 57.96
CDY06342 Canola cytosol 55.84 57.82
CDY22653 Canola cytosol 55.61 57.58
HORVU2Hr1G126540.1 Barley cytosol 44.62 57.35
AT1G08980.1 Thale cress cytosol 54.92 56.47
Solyc10g086170.1.1 Tomato cytosol 53.78 55.16
CDY03602 Canola cytosol, plastid 35.7 50.98
EER91017 Sorghum endoplasmic reticulum, golgi 46.22 34.35
KXG30729 Sorghum plastid 41.88 29.8
EES11532 Sorghum plastid 21.51 17.38
EES11732 Sorghum cytosol, nucleus, plastid 20.59 14.56
KXG23065 Sorghum plastid 21.51 12.63
KXG28572 Sorghum golgi 17.62 11.68
OQU82976 Sorghum peroxisome 13.5 11.11
PGSC0003DMT400031298 Potato cytosol 0.92 2.5
Protein Annotations
KEGG:00970+6.3.5.7MapMan:11.2.1.2.1Gene3D:3.90.1300.10EntrezGene:8079206InterPro:AS_sfInterPro:Amidase
InterPro:Amidase_CSInterPro:Amidase_domUniProt:C5X2G1EnsemblPlants:EER97555ProteinID:EER97555ProteinID:EER97555.1
GO:GO:0003674GO:GO:0003824GO:GO:0004040GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0005829GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009684GO:GO:0009851GO:GO:0009987GO:GO:0016787GO:GO:0016810
GO:GO:0043864InterPro:IPR036928PFAM:PF01425ScanProsite:PS00571PANTHER:PTHR11895PANTHER:PTHR11895:SF111
MetaCyc:PWY-5921EnsemblPlantsGene:SORBI_3002G378000SUPFAM:SSF75304unigene:Sbi.6436UniParc:UPI0001A83939RefSeq:XP_002461034.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr2:+:73454815..73461806
Molecular Weight (calculated)
46700.9 Da
IEP (calculated)
6.424
GRAVY (calculated)
0.032
Length
437 amino acids
Sequence
(BLAST)
001: MAMGGDYGAF MEKFELLPPQ SQQHLPLHGL TFAIKDIFDI SGRVTGFGNP DWARTHAPAG ATSPVVLATL AAGAISIGKT VMDEMAYSIN GENAHYGTPT
101: NPCAPDRVPG GSSSGSAVAV GAKLVDFALG TDTGGSVRVP AAYCGIFGLR PSHGLVSTEN VIPMSQMFDT VGWFARDLST LSRVSNVLLP LPADNTIKRP
201: THFKIPKDCF EILGSLNDQT YQILNASVAK RFGNDAVDNR NLGEFVSSNV PTVGKFISDF SRSEAPSVPA LSVISYVMRC LQRSEFKANH AEWVNTVRPN
301: LGPGIRERVY EAIASEDGPM EDFHVLKTEF KLALSALIKD DGILVIPTVP GSPPKLRMEA VALENFRARA FSLLSIAGLS GFCQLSIPLG VRGGVPVSVS
401: LVACHGADRF LLSVAQELYE TLKEETKKGW SSPDSSL
Best Arabidopsis Sequence Match ( AT1G08980.1 )
(BLAST)
001: MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP
101: RNPIAFDRVP GGSSSGSAVA VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA TLKRVGCVLL QQHHLNPIEP
201: SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV
301: KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV
401: SVSLVAKYGS DGFLLSLVDS LAAFI
Arabidopsis Description
AMI1Amidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FR37]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.