CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002104_P001	Maize	mitochondrion, plastid	95.56	94.69
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	90.02	90.02
TraesCS2D01G521500.1	Wheat	plastid	89.83	89.83
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	89.28	89.28
HORVU2Hr1G115000.1	Barley	cytosol, plastid	87.62	85.1
Os04t0643200-00	Rice	plastid	83.18	84.27
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	56.75	74.15
KRG98874	Soybean	mitochondrion	61.92	70.53
GSMUA_Achr9P09040_001	Banana	plastid	74.86	69.95
Solyc10g007840.2.1	Tomato	plastid	68.21	69.75
KRH46093	Soybean	mitochondrion	69.69	69.43
VIT_12s0028g01330.t01	Wine grape	mitochondrion	69.5	68.86
CDY04173	Canola	plastid	67.47	67.84
AT3G25660.1	Thale cress	plastid	67.28	67.78
CDY59872	Canola	plastid	67.28	67.66
Bra026512.1-P	Field mustard	cytosol	21.26	63.54
CDY46509	Canola	cytosol	21.26	63.54
PGSC0003DMT400054702	Potato	mitochondrion	50.46	53.32
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	26.8	41.79
EES11732	Sorghum	cytosol, nucleus, plastid	24.95	21.84
EER97555	Sorghum	cytosol	17.38	21.51
OQU82976	Sorghum	peroxisome	20.33	20.72
KXG23065	Sorghum	plastid	26.25	19.09
KXG28572	Sorghum	golgi	21.63	17.75
KXG30729	Sorghum	plastid	17.56	15.47
EER91017	Sorghum	endoplasmic reticulum, golgi	16.27	14.97

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:17.2.8.1	Gene3D:3.90.1300.10	EntrezGene:8079563	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_CS	InterPro:Amidase_dom	ncoils:Coil	EnsemblPlants:EES11532	ProteinID:EES11532	ProteinID:EES11532.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016787	GO:GO:0016874	GO:GO:0019538	GO:GO:0030956	GO:GO:0050567
InterPro:GatA	InterPro:IPR036928	HAMAP:MF_00120	PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895
PANTHER:PTHR11895:SF141	MetaCyc:PWY-5921	EnsemblPlantsGene:SORBI_3006G237100	SUPFAM:SSF75304	TIGRFAMs:TIGR00132	UniParc:UPI0001A86E6F
RefSeq:XP_002447204.1	SEG:seg	:	:	:	:

Description

GATAhypothetical protein

Coordinates

chr6:+:57851916..57856341

Molecular Weight (calculated)

56976.7 Da

IEP (calculated)

5.525

GRAVY (calculated)

0.009

Length

541 amino acids

Sequence
(BLAST)

001: MPPPLQAHRL LISHRRLPSP ARRRFTAASS LQSAPATTLA PGPATSSILS IRESLLSGER TAADITSEYL SRLRRTEPSL RSFIHVADAA AEREAEELDR
101: RIASGEKDAV GPLAGVLVGV KDNLCTANMP STGGSRILDG YRPAYDATAV RRLQEAGAIV VGKTNLDEFG MGSTTEGSAF QVTTNPWDDS RVPGGSSGGS
201: ASAVSARQCV VSLGSDTGGS VRQPASFCGV VGLKPTYGRV SRFGLMAYAS SLDVVGCFGS SVFDTATILS VVAGHDKMDS TSSSQVVPDY ASELVSLDLL
301: ESKPLAGLRI GIIQETLGEG VANGVISSIK GAASHLEQLG SVVEEVSLPS FSLGLPAYYI LASSEASSNL SRYDGIRYGR QFSADDLNEL YGESRANGLG
401: HEVKMRILMG TYALSAGYYD AYYKRAQQVR TLVKESFKDA LERYDILISP AAPSAAYKIG EKINDPLAMY AGDILTVNVN LAGLPALVVP CGFVEGGPAG
501: LPVGLQLIGS PFCEGNLLRV GHIFEQTLQN LSFVPPLLAE S

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.