Factsheet for Solyc10g007840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	61.81	78.99
VIT_12s0028g01330.t01	Wine grape	mitochondrion	78.26	75.82
HORVU5Hr1G093800.2	Barley	mitochondrion, plastid	51.98	74.73
KRG98874	Soybean	mitochondrion	65.97	73.47
AT3G25660.1	Thale cress	plastid	74.48	73.37
PGSC0003DMT400054702	Potato	mitochondrion	70.7	73.05
CDY04173	Canola	plastid	73.53	72.3
CDY59872	Canola	plastid	73.35	72.12
KRH46093	Soybean	mitochondrion	73.91	72.01
Bra026512.1-P	Field mustard	cytosol	24.57	71.82
CDY46509	Canola	cytosol	24.57	71.82
EES11532	Sorghum	plastid	69.75	68.21
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	69.38	67.84
TraesCS2D01G521500.1	Wheat	plastid	69.0	67.47
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	68.81	67.28
Zm00001d002104_P001	Maize	mitochondrion, plastid	69.19	67.03
GSMUA_Achr9P09040_001	Banana	plastid	72.4	66.15
Os04t0643200-00	Rice	plastid	62.95	62.36
Solyc10g086170.1.1	Tomato	cytosol	19.28	23.94
Solyc01g106340.2.1	Tomato	cytosol, golgi, plasma membrane	25.14	21.8
Solyc01g106330.2.1	Tomato	cytosol	25.33	21.68
Solyc01g106360.2.1	Tomato	plastid	24.57	21.38
Solyc01g106350.2.1	Tomato	cytosol	23.63	20.83
Solyc06g068690.2.1	Tomato	extracellular	20.79	18.9
Solyc12g070080.1.1	Tomato	cytosol, plastid	5.29	18.79
Solyc03g118030.2.1	Tomato	plastid	21.93	18.59
Solyc10g047300.1.1	Tomato	plastid	19.28	17.06
Solyc03g118690.2.1	Tomato	plastid	17.96	16.1
Solyc12g070090.1.1	Tomato	cytosol	4.35	10.65

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:17.2.8.1	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_CS
InterPro:Amidase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0016874	GO:GO:0016884
GO:GO:0019538	GO:GO:0030956	GO:GO:0032543	GO:GO:0050567	GO:GO:0070681	InterPro:GatA
InterPro:IPR036928	UniProt:K4CXW3	HAMAP:MF_00120	PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895
PANTHER:PTHR11895:SF141	SUPFAM:SSF75304	EnsemblPlantsGene:Solyc10g007840.2	EnsemblPlants:Solyc10g007840.2.1	TIGRFAMs:TIGR00132	UniParc:UPI000276B5C0
SEG:seg	:	:	:	:	:

Description

Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G25660) UniProtKB/Swiss-Prot;Acc:Q9LI77]

Coordinates

chr10:-:2047380..2052961

Molecular Weight (calculated)

56414.5 Da

IEP (calculated)

5.920

GRAVY (calculated)

-0.016

Length

529 amino acids

Sequence
(BLAST)

001: MLSSVQTPRL LRFQSFTLKC LHTHPTTTPP PPHSQILTIR KSLLSREISA VDLAGTFLNR LRNTEPQLKS FLYVSDVVLK EAEEIDRKIA ENEELGPLAG
101: VLVGVKDNIC TSDMPSTAGS KILENYRPPF DATAVGKMKK CGAIVIGKTN MDEFGMGSTT EGSGYQVTAN PWDLSRVPGG SSGGSAAAVS ARQCMVSLGS
201: DTGGSVRQPA SFCGVVGLKP TYGRVSRYGL VAYASSLDVI GCFGSSVTDA AILLHAISGH DKFDATSSKK EVPDFASQFT ARDHLDSKPL KGLRVGLIRD
301: TIEDGVDPDV ISSIRGAASH LEELGCTVTE VSLPSFSLGL PAYYILASSE SSSNLSRYDG VRYGKQVFAD ELNSLYGESR AGGLGAEVKM RILMGTYALS
401: AGYYDAYYKR AQQVRTLVRE SFRAALDEND ILISPAAPSA AYKIGEKKND PLSMYAGDIM TVNVNLAGLP ALVLPCGFVD SSSVALPVGV QMISAAFEEE
501: KLLKVGHIFE QTLQGCSFIP PLVADELGC

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.