Factsheet for Solyc03g118030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036918	Potato	plastid	94.87	94.87
Solyc06g068690.2.1	Tomato	extracellular	71.31	76.46
VIT_15s0024g00980.t01	Wine grape	cytosol	63.62	72.84
VIT_00s0283g00010.t01	Wine grape	mitochondrion	19.23	69.77
VIT_15s0024g01020.t01	Wine grape	cytosol	62.98	69.19
KRH41039	Soybean	mitochondrion	53.53	68.44
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	66.99	66.88
KRH59711	Soybean	plasma membrane	64.9	65.43
CDX98979	Canola	plastid	62.98	60.55
Bra009269.1-P	Field mustard	plastid	62.34	60.12
CDX70030	Canola	plastid	62.34	60.12
AT5G07360.1	Thale cress	plastid	63.46	60.09
TraesCS3A01G347600.4	Wheat	endoplasmic reticulum, golgi	61.22	59.97
TraesCS3B01G379500.5	Wheat	golgi, vacuole	61.06	59.81
TraesCS3D01G341200.1	Wheat	mitochondrion, vacuole	60.9	59.28
KXG28572	Sorghum	golgi	62.02	58.73
Zm00001d052660_P002	Maize	mitochondrion	60.9	57.84
Os11t0536800-01	Rice	golgi, plastid	61.38	57.25
HORVU3Hr1G088210.5	Barley	endoplasmic reticulum, golgi	60.58	56.84
Solyc10g007840.2.1	Tomato	plastid	18.59	21.93
Solyc01g106330.2.1	Tomato	cytosol	19.39	19.58
Solyc01g106350.2.1	Tomato	cytosol	18.75	19.5
Solyc01g106340.2.1	Tomato	cytosol, golgi, plasma membrane	18.75	19.18
Solyc01g106360.2.1	Tomato	plastid	18.59	19.08
Solyc10g086170.1.1	Tomato	cytosol	11.54	16.9
Solyc12g070080.1.1	Tomato	cytosol, plastid	3.37	14.09
Solyc03g118690.2.1	Tomato	plastid	13.3	14.07
Solyc10g047300.1.1	Tomato	plastid	13.3	13.88
Solyc12g070090.1.1	Tomato	cytosol	4.17	12.04

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0016787	InterPro:IPR036928	UniProt:K4BLV4
PFAM:PF01425	PANTHER:PTHR11895	PANTHER:PTHR11895:SF73	SUPFAM:SSF75304	EnsemblPlantsGene:Solyc03g118030.2	EnsemblPlants:Solyc03g118030.2.1
UniParc:UPI0002767A52	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:67018231..67022987

Molecular Weight (calculated)

68777.3 Da

IEP (calculated)

7.005

GRAVY (calculated)

-0.148

Length

624 amino acids

Sequence
(BLAST)

001: MACYAAIEKG GDVFFPTPAR SVRRSFHLLM FVLIFTLLLN SNCVSSYSSG YWDFSSSNST VMERGKLGPG NPGVCSRKAK HLPVCECGFK MLDSCFLNKN
101: KMLEIEKGAN DFNIPIIRSN RKLVASTDGG LHKPSCLVFN SAWKARQVEH EPNKKLNYPS PAGIQRPKSD EDIAFMSILE LGQLLKENLI TSVELTGIFL
201: KRLKRYGPVL ESVVTITEEL AYKQAKEADQ LLAEGKYLGP LHGIPYGLKD IIAVPNYTTT WGSTSFKDQV LDIEAWVYKR LKSAGAVLVA KLVTGSLAYD
301: DIWFGGRTRN PWNIEEYSTG SSAGPASCTS AGLVPFAIGS ETCGSITYPA SRCGVTALRP TFGAVGRTGI MSIAESLDKI GPFCRNSVDC VIILDAIRGK
401: DPDDVSSRDI SFRDPFSVDI TKLTVGYLED AEMEVVHVLQ SKGVNMVPFN LSYTVDSVQG VLNFTMDVEM LAHFDKWQRS NLDDEYEAQD QWPTELRRAR
501: AISAVDYFQA QRARGILIQQ VRENFSVDAF IGNATDWEKV CVGNLVGIPV VIVPTGFKKI SDAPSNDIRR RTTITTGIYA PPDRDHIALA LAIAYQSVTN
601: HHKQRPPIDD LGPNDPIPES PKSL

Best Arabidopsis Sequence Match ( AT5G07360.3 )
(BLAST)

001: MARPSIATCD PSARPCLATR GSLPRSRTCA PLLFLCLLLG LTVFCADANP SDSKLLCSRL LPCEPSIEMV RNCKNLWKLL DRKVSVPCRK ITTLTRTVTL
101: TELPDKTMEA KCLQGMFELI DSAFFNETKL QEIAKGATEM NVPIYRANRK LVATKNGGLE NPSPLVFNPS WNREVQRVQD KRFKYPSASG VKLPRDEEDI
201: AFMSVLELGE LIKTRQITSK ELVRIYLKQL KRYNHVLEAV VTYTEELAYK QAKEADDLLS QGTYLGPLHG IPYGLKDIVA VPGYKTTWGS TSFKDQFLDI
301: EAWVYKRLKA SGAVLVAKLV TGSMAYDDIW FGGRTRNPWN IEEFSTGSSA GPAASTSAGM VPFAIGSETA GSMTYPAARC GITALRPTFG SVGRTGVMSI
401: SESLDKLGPF CRTAADCAVI LDAIKGKDPD DLSSREIAFE DPFSVDITKL TVGYTKDADM KVVEVLGSKG VNMVPFELNY TVESVQGILN FTMDVDMLAH
501: FDEWQRTGQE DLYEAQDQWP VELRRARVVT AVDYIQAQRA RGKLIREVEK SFTVDAFIGN VTDWEKVCMG NLVGLPVLVI PTGFKNITDP PTNSCRRRTT
601: INAGIYAPPE RDHIALALGM AYQSVTDAHR KRPPIDDLGP DDSIPNPPRA LIPPRRLHI

Arabidopsis Description

Amidase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6N3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.