Factsheet for VIT_15s0024g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0024g01020.t01	Wine grape	cytosol	88.81	85.21
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	93.03	81.12
VIT_00s0283g00010.t01	Wine grape	mitochondrion	24.22	76.74
KRH41039	Soybean	mitochondrion	63.3	70.7
KRH59711	Soybean	plasma membrane	76.51	67.37
Solyc06g068690.2.1	Tomato	extracellular	70.46	65.98
Solyc03g118030.2.1	Tomato	plastid	72.84	63.62
PGSC0003DMT400036918	Potato	plastid	72.66	63.46
Bra009269.1-P	Field mustard	plastid	73.03	61.51
CDX70030	Canola	plastid	73.03	61.51
CDX98979	Canola	plastid	73.21	61.48
AT5G07360.1	Thale cress	plastid	73.94	61.15
KXG28572	Sorghum	golgi	73.58	60.85
TraesCS3B01G379500.5	Wheat	golgi, vacuole	70.83	60.6
Zm00001d052660_P002	Maize	mitochondrion	72.84	60.43
TraesCS3A01G347600.4	Wheat	endoplasmic reticulum, golgi	70.46	60.28
TraesCS3D01G341200.1	Wheat	mitochondrion, vacuole	70.28	59.75
HORVU3Hr1G088210.5	Barley	endoplasmic reticulum, golgi	71.38	58.5
Os11t0536800-01	Rice	golgi, plastid	71.56	58.3
VIT_12s0028g01330.t01	Wine grape	mitochondrion	21.1	21.06
VIT_14s0128g00320.t01	Wine grape	cytosol	14.86	18.71
VIT_03s0097g00620.t01	Wine grape	cytosol, nucleus, plasma membrane	19.63	17.63
VIT_07s0031g02700.t01	Wine grape	golgi	19.63	17.54
VIT_12s0028g00300.t01	Wine grape	cytosol	17.06	15.32
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	14.5	13.39

Protein Annotations

KEGG:00970+6.3.5.7	EntrezGene:100253958	wikigene:100253958	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_dom	ProteinID:CCB62169	ProteinID:CCB62169.1	UniProt:F6I5F1	EMBL:FN596748
GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0016787	InterPro:IPR036928	EntrezGene:LOC100253958
wikigene:LOC100253958	PFAM:PF01425	PANTHER:PTHR11895	PANTHER:PTHR11895:SF73	SUPFAM:SSF75304	UniParc:UPI000210A26C
ArrayExpress:VIT_15s0024g00980	EnsemblPlantsGene:VIT_15s0024g00980	EnsemblPlants:VIT_15s0024g00980.t01	unigene:Vvi.20801	RefSeq:XP_002270786	RefSeq:XP_002270786.1
RefSeq:XP_010661163.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:1927399..1930965

Molecular Weight (calculated)

60199.9 Da

IEP (calculated)

6.046

GRAVY (calculated)

-0.236

Length

545 amino acids

Sequence
(BLAST)

001: MDKAGCSEKI NEVSPLKCAF AIFDADFFND TKIAEIEKGA TELNIPISRA NRKLVASING GLHDPPYLIF NPEWGNEQVQ SRSKRFSYPS ISGIQRPESE
101: EDIAFMTVLE LGELIKTKQI TSEELTRIFL HRLKRYNHVL EAVVTYTEEL AYKQAKEADE MLARGIYLGP LHGIPYGLKD IISVPQYKTT WGSRTFKDQV
201: LDIEAWVYKK LKSAGAVLVA KLATGSLAYS DIWFGGRTRN PWNIKKYSSG SSSGSAASTS AGMVPFAIGS ETCGSITSPA ARCGVTALRP TFGAVGRTGV
301: MSISESLDKI GPFCRSAADC SIILDAILGK DPDDPSSKDI SLDDPFSVDI TNLTVGYLDD AEMEVVRILE SKGVKMVPFK LNYTVNHVQG ILNFTMDVDM
401: LAHFDEWQRT GEDDFYEAQD QWPVELRRAR VIPAVDYVQA QRARGKLIRE IRESFTVDAF IGNATDPEKV CMGNLVGMPV LIVPTGFTQI SKPPPDGSRR
501: RKTITTGIYA PPNHDHVALA LGMAYQSVTE HHRQRPPIDD LGPMT

Best Arabidopsis Sequence Match ( AT5G07360.3 )
(BLAST)

001: MARPSIATCD PSARPCLATR GSLPRSRTCA PLLFLCLLLG LTVFCADANP SDSKLLCSRL LPCEPSIEMV RNCKNLWKLL DRKVSVPCRK ITTLTRTVTL
101: TELPDKTMEA KCLQGMFELI DSAFFNETKL QEIAKGATEM NVPIYRANRK LVATKNGGLE NPSPLVFNPS WNREVQRVQD KRFKYPSASG VKLPRDEEDI
201: AFMSVLELGE LIKTRQITSK ELVRIYLKQL KRYNHVLEAV VTYTEELAYK QAKEADDLLS QGTYLGPLHG IPYGLKDIVA VPGYKTTWGS TSFKDQFLDI
301: EAWVYKRLKA SGAVLVAKLV TGSMAYDDIW FGGRTRNPWN IEEFSTGSSA GPAASTSAGM VPFAIGSETA GSMTYPAARC GITALRPTFG SVGRTGVMSI
401: SESLDKLGPF CRTAADCAVI LDAIKGKDPD DLSSREIAFE DPFSVDITKL TVGYTKDADM KVVEVLGSKG VNMVPFELNY TVESVQGILN FTMDVDMLAH
501: FDEWQRTGQE DLYEAQDQWP VELRRARVVT AVDYIQAQRA RGKLIREVEK SFTVDAFIGN VTDWEKVCMG NLVGLPVLVI PTGFKNITDP PTNSCRRRTT
601: INAGIYAPPE RDHIALALGM AYQSVTDAHR KRPPIDDLGP DDSIPNPPRA LIPPRRLHI

Arabidopsis Description

Amidase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6N3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.