Factsheet for VIT_12s0028g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	62.27	82.13
Solyc10g007840.2.1	Tomato	plastid	75.82	78.26
KRG98874	Soybean	mitochondrion	67.03	77.05
CDY04173	Canola	plastid	75.09	76.21
HORVU5Hr1G093800.2	Barley	mitochondrion, plastid	51.28	76.09
AT3G25660.1	Thale cress	plastid	74.73	75.98
CDY59872	Canola	plastid	74.54	75.65
KRH46093	Soybean	mitochondrion	73.99	74.4
CDY46509	Canola	cytosol	23.63	71.27
Bra026512.1-P	Field mustard	cytosol	23.63	71.27
EES11532	Sorghum	plastid	68.86	69.5
TraesCS2D01G521500.1	Wheat	plastid	68.86	69.5
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	68.86	69.5
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	68.31	68.95
Zm00001d002104_P001	Maize	mitochondrion, plastid	68.68	68.68
GSMUA_Achr9P09040_001	Banana	plastid	72.71	68.57
Os04t0643200-00	Rice	plastid	61.9	63.3
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	28.57	44.96
VIT_07s0031g02700.t01	Wine grape	golgi	26.19	23.44
VIT_03s0097g00620.t01	Wine grape	cytosol, nucleus, plasma membrane	25.82	23.23
VIT_14s0128g00320.t01	Wine grape	cytosol	17.95	22.63
VIT_15s0024g00980.t01	Wine grape	cytosol	21.06	21.1
VIT_00s0283g00010.t01	Wine grape	mitochondrion	6.04	19.19
VIT_15s0024g01020.t01	Wine grape	cytosol	19.41	18.66
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	21.25	18.56
VIT_12s0028g00300.t01	Wine grape	cytosol	19.23	17.3
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	17.77	16.44

Protein Annotations

KEGG:00970+6.3.5.7	EntrezGene:100247231	wikigene:100247231	MapMan:17.2.8.1	Gene3D:3.90.1300.10	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_CS	InterPro:Amidase_dom	ProteinID:CBI22047	ProteinID:CBI22047.3	UniProt:E0CTY1
EMBL:FN595235	EntrezGene:GATA	wikigene:GATA	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004040	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0016874
GO:GO:0019538	GO:GO:0030956	GO:GO:0050567	InterPro:GatA	InterPro:IPR036928	HAMAP:MF_00120
PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895	PANTHER:PTHR11895:SF141	SUPFAM:SSF75304	TIGRFAMs:TIGR00132
UniParc:UPI0001984512	ArrayExpress:VIT_12s0028g01330	EnsemblPlantsGene:VIT_12s0028g01330	EnsemblPlants:VIT_12s0028g01330.t01	unigene:Vvi.12545	RefSeq:XP_002278150
RefSeq:XP_002278150.1	SEG:seg	:	:	:	:

Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:E0CTY1]

Coordinates

chr12:-:1956475..1963438

Molecular Weight (calculated)

58130.6 Da

IEP (calculated)

7.682

GRAVY (calculated)

-0.038

Length

546 amino acids

Sequence
(BLAST)

001: MLSTVQNPRF LLRQCRHFPP KRRRFHSSTP LFLSQPQTLA STDPPSSPPQ SQILTIRDNL INRRTTAVEL AQLSLNRLRL TEPQINSFIS VSETVLREAE
101: EIDAKIARNE ELGPLAGVFV GVKDNICTAD MPSTGGSRIL ENYRPPFDAT AVKRVKDCGG IVVGKTNLDE FGMGSTTEGS AFQVTANPWD VSRVPGGSSG
201: GSAAAVSARQ CVVSLGSDTG GSVRQPASFC GVVGLKPTYG RVSRFGLMAY ASSLDVIGCF GSSVADTGIL LHAIAGYDGL DSTSSKHEVP NYTSQFMSIS
301: SLESKPLKGL RVGLIRETLD DGVDKAVVSS IVGAASHLEE LGCTVTEVSL PSFSLGLPAY YILASSESSS NLSRYDGVRY GSQVGADRLN SLYGDSRAKG
401: FGPEVKMRIL TGTYALSAGY YDAYYKRAQQ VRTLVQKSFK AALNENDILI SPAAPSPAYS IGEKKNDPLA MYAGDIMTVN VNLAGLPALV LPCGFVEGGP
501: AGLPVGLQMI GAAFDEEKLL KVGHIFEQML KGYKFIPPLL ADGIAC

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.