Factsheet for Zm00001d002104_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11532	Sorghum	plastid	94.69	95.56
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	88.64	89.46
TraesCS2D01G521500.1	Wheat	plastid	87.91	88.72
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	87.36	88.17
HORVU2Hr1G115000.1	Barley	cytosol, plastid	85.53	83.84
Os04t0643200-00	Rice	plastid	80.77	82.58
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	56.59	74.64
GSMUA_Achr9P09040_001	Banana	plastid	74.91	70.64
KRG98874	Soybean	mitochondrion	61.36	70.53
KRH46093	Soybean	mitochondrion	68.86	69.24
Solyc10g007840.2.1	Tomato	plastid	67.03	69.19
VIT_12s0028g01330.t01	Wine grape	mitochondrion	68.68	68.68
AT3G25660.1	Thale cress	plastid	67.4	68.53
CDY04173	Canola	plastid	67.22	68.22
CDY59872	Canola	plastid	67.03	68.03
CDY46509	Canola	cytosol	20.7	62.43
Bra026512.1-P	Field mustard	cytosol	20.7	62.43
PGSC0003DMT400054702	Potato	mitochondrion	49.45	52.73
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	26.74	42.07
Zm00001d004817_P002	Maize	cytosol, golgi, peroxisome	27.66	24.2
Zm00001d023543_P003	Maize	cytosol, endoplasmic reticulum, peroxisome	27.29	23.65
Zm00001d006886_P002	Maize	cytosol	16.85	20.72
Zm00001d024936_P002	Maize	mitochondrion	23.99	18.93
Zm00001d052660_P002	Maize	mitochondrion	21.25	17.66
Zm00001d018098_P005	Maize	plasma membrane	17.58	15.64
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	16.12	14.62
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	11.72	14.48

Protein Annotations

KEGG:00970+6.3.5.7	EntrezGene:100280064	MapMan:17.2.8.1	Gene3D:3.90.1300.10	UniProt:A0A1D6DWL6	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_CS	InterPro:Amidase_dom	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016740	GO:GO:0016787	GO:GO:0016874	GO:GO:0016884	GO:GO:0019538	GO:GO:0030956
GO:GO:0032543	GO:GO:0050567	GO:GO:0070681	InterPro:GatA	InterPro:IPR036928	HAMAP:MF_00120
ProteinID:ONM13068.1	PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895	PANTHER:PTHR11895:SF141	SUPFAM:SSF75304
TIGRFAMs:TIGR00132	UniParc:UPI00084584DA	EnsemblPlantsGene:Zm00001d002104	EnsemblPlants:Zm00001d002104_P001	EnsemblPlants:Zm00001d002104_T001	SEG:seg

Description

Glutamyl-tRNA(Gln) amidotransferase subunit A%2C chloroplastic/mitochondrial

Coordinates

chr2:+:5993672..5998425

Molecular Weight (calculated)

57404.5 Da

IEP (calculated)

6.192

GRAVY (calculated)

0.032

Length

546 amino acids

Sequence
(BLAST)

001: MPPPLQAHRL LISHRRLPTP ARRRFTAASS VQSAPATTLA PGPATSSILS IRESLLSGER TAADITSEYL SRLRRTEPTL RSFIHVADAA AEREAEELDR
101: RIASGEKDAV GPLAGVLVGV KDNLCTANMP STGGSRILDG YRPAYDATAV RRLREAGAIV LGKTNLDEFG MGSTTEGSAF QVTTNPWDDS RVPGGSSGGS
201: AAAVSARQCV VSLGSDTGGS VRQPASFCGV VGLKPTYGRV SRFGLMAYAS SLDVVGCFGS SVFDTATILS VVAGHDKMDA TSSSQVVPEY ASELVSLDLL
301: ESKPLNGVRI GIIQETLGEG VASGVVSSIK GAASHLEQLG SVVSLPSFSL GLPAYYILAS SEASSNLSRY DGIRYGGQVS ADDLNELYGE SRANGFGHEV
401: KMRILMGTYA LSAGYYDAYY KRAQQVRTLV KQSFKDALER YDILISPAAP SAAYKIGMLQ SACEKINDPL AMYAGDIMTV NVNLAGLPAL VVPCGFVEGG
501: AAGLPVGLQM MGSPFCEGNL LRVGHIFEQT LQNLSFVPPL LAEGQL

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.