Factsheet for PGSC0003DMT400054702

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007840.2.1	Tomato	plastid	73.05	70.7
EES11532	Sorghum	plastid	53.32	50.46
TraesCS2D01G521500.1	Wheat	plastid	52.54	49.72
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	52.54	49.72
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	52.34	49.54
Zm00001d002104_P001	Maize	mitochondrion, plastid	52.73	49.45
GSMUA_Achr9P09040_001	Banana	plastid	55.47	49.05
Os04t0643200-00	Rice	plastid	50.59	48.5
PGSC0003DMT400021967	Potato	cytosol	8.2	40.38
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	15.23	23.42
PGSC0003DMT400093880	Potato	cytosol	17.77	21.06
PGSC0003DMT400008093	Potato	cytosol	22.46	18.61
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	22.07	18.59
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	11.72	17.29
PGSC0003DMT400036918	Potato	plastid	19.14	15.71
PGSC0003DMT400014757	Potato	endoplasmic reticulum	16.21	14.07
PGSC0003DMT400008084	Potato	cytosol	8.98	13.9
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	7.03	13.09
PGSC0003DMT400031298	Potato	cytosol	1.95	6.25

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:15.5.15	MapMan:17.2.8.1	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_CS	InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004040
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0016787	InterPro:IPR013087	InterPro:IPR036928	UniProt:M1BWR0
PFAM:PF01425	PFAM:PF13912	EnsemblPlantsGene:PGSC0003DMG401021239	PGSC:PGSC0003DMG401021239	EnsemblPlants:PGSC0003DMT400054702	ScanProsite:PS00028
ScanProsite:PS00571	PFscan:PS50157	PANTHER:PTHR11895	PANTHER:PTHR11895:SF141	SUPFAM:SSF57667	SUPFAM:SSF75304
UniParc:UPI000296ACD7	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

Glu-tRNA(Gln) amidotransferase subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG401021239]

Coordinates

chr10:-:2801652..2805831

Molecular Weight (calculated)

54942.6 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.176

Length

512 amino acids

Sequence
(BLAST)

001: MLSSVQTPRL LRFQSFSLKC LHTHPTTTSP PPHSQILTIR KSLLSREISA VDLAGTFLNR LRNTEPHLKS FLYVSDVVLK EAEEIDRKIA ENEELGPLAG
101: VLVGVKDNIC TSDMPSTAGS KILENYRPPF DATAVGKMKK CGAIVIGKTN MDEFGMGSTT EGSGYQVTAN PWDLSRVPGG SSGGSAAAVS ARQCMVSLGS
201: DTGGSVRQPA SFCGVVGLKP TYGRVSRYGL VAYASSLDVI GCFGSSVADA GILLHAISGH DKFDATSSKK EVPDFASQFT ARDHLDSKPL KGLRVGLIRE
301: TIEDGVDPDV ISSIRGAASH LEELGCTVTE VSLPSFSLGL PAYYILASSE SSSNLSRYDG ISPCRPIIGT HMPLSLTAPS SFTRVTFQFE SKGQQQLRYL
401: ENWTTGERSK RSRSMDRQPT EEEYLALCLI MLARSDGSVS QVRSLPPPVP VMKIHTPSEK MLYKCSVCGK GFGSYQALGG HKTTHQKLIA GGGGGDDQST
501: TSTTIFCNFL KF

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.