Factsheet for PGSC0003DMT400036918

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118030.2.1	Tomato	plastid	94.87	94.87
VIT_15s0024g00980.t01	Wine grape	cytosol	63.46	72.66
VIT_15s0024g01020.t01	Wine grape	cytosol	62.5	68.66
VIT_00s0283g00010.t01	Wine grape	mitochondrion	18.91	68.6
KRH41039	Soybean	mitochondrion	53.21	68.03
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	66.67	66.56
KRH59711	Soybean	plasma membrane	65.22	65.75
CDX98979	Canola	plastid	63.62	61.17
Bra009269.1-P	Field mustard	plastid	63.14	60.9
CDX70030	Canola	plastid	63.14	60.9
TraesCS3A01G347600.4	Wheat	endoplasmic reticulum, golgi	61.86	60.6
AT5G07360.1	Thale cress	plastid	63.94	60.55
TraesCS3B01G379500.5	Wheat	golgi, vacuole	61.7	60.44
KXG28572	Sorghum	golgi	63.3	59.94
TraesCS3D01G341200.1	Wheat	mitochondrion, vacuole	61.54	59.91
Zm00001d052660_P002	Maize	mitochondrion	62.34	59.21
Os11t0536800-01	Rice	golgi, plastid	62.98	58.74
HORVU3Hr1G088210.5	Barley	endoplasmic reticulum, golgi	61.54	57.74
PGSC0003DMT400021967	Potato	cytosol	5.45	32.69
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	11.22	21.02
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	19.39	19.9
PGSC0003DMT400008093	Potato	cytosol	19.55	19.74
PGSC0003DMT400054702	Potato	mitochondrion	15.71	19.14
PGSC0003DMT400008084	Potato	cytosol	10.1	19.03
PGSC0003DMT400093880	Potato	cytosol	12.02	17.36
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	6.73	15.27
PGSC0003DMT400014757	Potato	endoplasmic reticulum	13.14	13.9
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	6.09	10.95
PGSC0003DMT400031298	Potato	cytosol	2.56	10.0

Protein Annotations

KEGG:00970+6.3.5.7	EntrezGene:102601214	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0016787	InterPro:IPR036928
UniProt:M1B4H3	PFAM:PF01425	EnsemblPlantsGene:PGSC0003DMG400014230	PGSC:PGSC0003DMG400014230	EnsemblPlants:PGSC0003DMT400036918	PANTHER:PTHR11895
PANTHER:PTHR11895:SF73	SUPFAM:SSF75304	UniParc:UPI0002959C49	RefSeq:XP_006341453.1	RefSeq:XP_015161683.1	SEG:seg

Description

Amidase [Source:PGSC_GENE;Acc:PGSC0003DMG400014230]

Coordinates

chr3:-:57613506..57620157

Molecular Weight (calculated)

68462.9 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.128

Length

624 amino acids

Sequence
(BLAST)

001: MACYAASEKG GDVFFPIPAR SVRRSLRLPM FVLVFTLLLN SSCVSSYSSG YWDFTCNNST DMERGKLGPQ NPGVCSGKAT HLPVCECGFK MLDSCFLNKN
101: KMLEIEKGAN DLNIPIIRSN RKLVASIDGG LHKPSCLVFN SAWKARQLEH EPNKKLNYPS PAGIQRPKSD EDIAFMSILE LGQLLKANLI TSVELTGIFL
201: KRLKRYGPVL ESVVTITEEL AYKQAKEADQ LLAEGKYLGP LHGIPYGLKD IIAVPNYTTT WGSTSFKVQV LDIEAWVYKR LKSAGAVLVA KLVTGSLAYD
301: DIWFGGRTRN PWNIEEYSTG SSAGPASCTS AGLVPFAIGS ETSGSITYPA SRCGVTALRP TFGAVGRTGV MSIAESLDKL GPFCRNSVDC VVVLDAIRGK
401: DPDDVSSRDI SFGDPFSVDI TKLTVGYLED AEMEVVHVLQ SKGVNMVPFN LSYTVDSVQG ILNFTMDVEM LAHFDKWQRS NLDDEYEAQD QWPIELRRAR
501: AISAVDYFQA QRARGILIQQ VRESFSVDAF IGNATDWEKV CVGNLVGFPV VVVPTGFKKI SDAPSNDTRR RTTITTGIYA PPDRDHVALA LAIAYQSVTN
601: HHKQRPPIDD LGPNDPIPES PKSL

Best Arabidopsis Sequence Match ( AT5G07360.3 )
(BLAST)

001: MARPSIATCD PSARPCLATR GSLPRSRTCA PLLFLCLLLG LTVFCADANP SDSKLLCSRL LPCEPSIEMV RNCKNLWKLL DRKVSVPCRK ITTLTRTVTL
101: TELPDKTMEA KCLQGMFELI DSAFFNETKL QEIAKGATEM NVPIYRANRK LVATKNGGLE NPSPLVFNPS WNREVQRVQD KRFKYPSASG VKLPRDEEDI
201: AFMSVLELGE LIKTRQITSK ELVRIYLKQL KRYNHVLEAV VTYTEELAYK QAKEADDLLS QGTYLGPLHG IPYGLKDIVA VPGYKTTWGS TSFKDQFLDI
301: EAWVYKRLKA SGAVLVAKLV TGSMAYDDIW FGGRTRNPWN IEEFSTGSSA GPAASTSAGM VPFAIGSETA GSMTYPAARC GITALRPTFG SVGRTGVMSI
401: SESLDKLGPF CRTAADCAVI LDAIKGKDPD DLSSREIAFE DPFSVDITKL TVGYTKDADM KVVEVLGSKG VNMVPFELNY TVESVQGILN FTMDVDMLAH
501: FDEWQRTGQE DLYEAQDQWP VELRRARVVT AVDYIQAQRA RGKLIREVEK SFTVDAFIGN VTDWEKVCMG NLVGLPVLVI PTGFKNITDP PTNSCRRRTT
601: INAGIYAPPE RDHIALALGM AYQSVTDAHR KRPPIDDLGP DDSIPNPPRA LIPPRRLHI

Arabidopsis Description

Amidase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6N3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.