Factsheet for PGSC0003DMT400031298

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
plasma membrane 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	32.5	18.91
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	33.75	8.88
PGSC0003DMT400008093	Potato	cytosol	33.12	8.58
PGSC0003DMT400036918	Potato	plastid	10.0	2.56
PGSC0003DMT400008084	Potato	cytosol	5.0	2.42
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	5.0	2.4
PGSC0003DMT400054702	Potato	mitochondrion	6.25	1.95
PGSC0003DMT400014757	Potato	endoplasmic reticulum	5.0	1.36
TraesCS2D01G573300.1	Wheat	cytosol	3.12	1.11
TraesCS2A01G562400.1	Wheat	cytosol	3.12	1.1
TraesCS5D01G083700.1	Wheat	cytosol	1.88	1.0
Os04t0118100-01	Rice	cytosol	2.5	0.92
EER97555	Sorghum	cytosol	2.5	0.92
TraesCS2B01G603900.1	Wheat	cytosol	2.5	0.9
TraesCS2B01G624200.1	Wheat	cytosol	2.5	0.89
TraesCS2D01G573400.3	Wheat	cytosol, endoplasmic reticulum, peroxisome	1.88	0.69
Zm00001d006886_P002	Maize	cytosol	1.88	0.68
Os04t0117900-01	Rice	plasma membrane, plastid	1.25	0.46
PGSC0003DMT400093880	Potato	cytosol	0.62	0.23
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	0.0	0.0
PGSC0003DMT400021967	Potato	cytosol	0.0	0.0
HORVU2Hr1G126540.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400031298	EnsemblPlantsGene:PGSC0003DMG400011995	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:Amidase	KEGG:00970+6.3.5.7	PANTHER:PTHR11895
PANTHER:PTHR11895:SF67	PGSC:PGSC0003DMG400011995	TMHMM:TMhelix	UniParc:UPI0002956CB2	UniProt:M1AVG7	MapMan:35.2

Description

Amidase [Source:PGSC_GENE;Acc:PGSC0003DMG400011995]

Coordinates

chr12:+:29063490..29068600

Molecular Weight (calculated)

18182.9 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.229

Length

160 amino acids

Sequence
(BLAST)

001: MGFLKTKGEI YKAAEDVDVG PNSNQFYLTA NVKAPRMAGF LVKVFAWLLE TPIFGSIMLY FLKRNNLIHK LVTFAELQES PLYVPLHYYQ GGKEEENQSG
101: ASPREQVRQA LGCMVAPKPL YSFSRWTILD YSTAYNSKLI TPTKWNPMFD PEEETTTAIA

Best Arabidopsis Sequence Match ( AT5G64440.1 )
(BLAST)

001: MGKYQVMKRA SEVDLSTVKY KAETMKAPHL TGLSFKLFVN LLEAPLIGSL IVDYLKKDNG MTKIFRNTVI PEEPMFRPEF PSQEPEHDVV IVGEDESPID
101: RLETALKCLP QYDPSRSLHA DPVSSFRYWK IRDYAYAYRS KLTTPLQVAK RIISIIEEFG YDKPPTPFLI RFDANEVIKQ AEASTRRFEQ GNPISVLDGI
201: FVTIKDDIDC LPHPTNGGTT WLHEDRSVEK DSAVVSKLRS CGAILLGKAN MHELGMGTTG NNSNYGTTRN PHDPKRYTGG SSSGSAAIVA AGLCSAALGT
301: DGGGSVRIPS ALCGITGLKT TYGRTDMTGS LCEGGTVEII GPLASSLEDA FLVYAAILGS SSADRYNLKP SPPCFPKLLS HNGSNAIGSL RLGKYTKWFN
401: DVSSSDISDK CEDILKLLSN NHGCKVVEIV VPELEEMRAA HVISIGSPTL SSLTPYCEAG KNSKLSYDTR TSFAIFRSFS ASDYIAAQCL RRRLMEYHLN
501: IFKDVDVIVT PTTGMTAPVI PPDALKNGET NIQVTTDLMR FVLAANLLGF PAISVPVGYD KEGLPIGLQI MGRPWAEATV LGLAAAVEEL APVTKKPAIF
601: YDILNTN

Arabidopsis Description

FAAHFatty acid amide hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q7XJJ7]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.