Factsheet for PGSC0003DMT400008091

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031298	Potato	cytosol	18.91	32.5
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	70.18	31.74
PGSC0003DMT400008093	Potato	cytosol	66.91	29.77
PGSC0003DMT400008084	Potato	cytosol	21.09	17.52
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	15.27	12.61
PGSC0003DMT400054702	Potato	mitochondrion	13.09	7.03
PGSC0003DMT400036918	Potato	plastid	15.27	6.73
PGSC0003DMT400093880	Potato	cytosol	10.18	6.48
PGSC0003DMT400021967	Potato	cytosol	2.18	5.77
PGSC0003DMT400014757	Potato	endoplasmic reticulum	11.64	5.42
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	2.55	2.02

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	InterPro:IPR036928	UniProt:M0ZU17	PFAM:PF01425	EnsemblPlantsGene:PGSC0003DMG400003119	PGSC:PGSC0003DMG400003119
EnsemblPlants:PGSC0003DMT400008091	PANTHER:PTHR11895	PANTHER:PTHR11895:SF67	SUPFAM:SSF75304	TMHMM:TMhelix	UniParc:UPI00029520E6

Description

Glutamyl-tRNA(Gln) amidotransferase subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400003119]

Coordinates

chr1:+:82978545..82987349

Molecular Weight (calculated)

30759.9 Da

IEP (calculated)

4.707

GRAVY (calculated)

-0.155

Length

275 amino acids

Sequence
(BLAST)

001: MLPASEVDMT TVKYTTQKIQ APYLTGFWLK LFVMLAETPI IGSMIMIFLQ KMNRGAERFK NTVIPEAPMF VPEFPPQESE PSVFGLEEDG KPEERVELAL
101: QCLPDYNPGC IWITDPAAPF RYWKIRDYAY AYRSKLTAPS QVAESFISAI EESNNQNPLA PLLISYDPDE VRRQAAASTQ RFEEGSELSI LDGIFIAVKD
201: DIDCYPYPSK GGTTWFHEIH EVKKDAVCIS RLRNCGAVLV GKTNMHELGL GITGNNTNFG RCFFIINGSM GGGFA

Best Arabidopsis Sequence Match ( AT5G64440.1 )
(BLAST)

001: MGKYQVMKRA SEVDLSTVKY KAETMKAPHL TGLSFKLFVN LLEAPLIGSL IVDYLKKDNG MTKIFRNTVI PEEPMFRPEF PSQEPEHDVV IVGEDESPID
101: RLETALKCLP QYDPSRSLHA DPVSSFRYWK IRDYAYAYRS KLTTPLQVAK RIISIIEEFG YDKPPTPFLI RFDANEVIKQ AEASTRRFEQ GNPISVLDGI
201: FVTIKDDIDC LPHPTNGGTT WLHEDRSVEK DSAVVSKLRS CGAILLGKAN MHELGMGTTG NNSNYGTTRN PHDPKRYTGG SSSGSAAIVA AGLCSAALGT
301: DGGGSVRIPS ALCGITGLKT TYGRTDMTGS LCEGGTVEII GPLASSLEDA FLVYAAILGS SSADRYNLKP SPPCFPKLLS HNGSNAIGSL RLGKYTKWFN
401: DVSSSDISDK CEDILKLLSN NHGCKVVEIV VPELEEMRAA HVISIGSPTL SSLTPYCEAG KNSKLSYDTR TSFAIFRSFS ASDYIAAQCL RRRLMEYHLN
501: IFKDVDVIVT PTTGMTAPVI PPDALKNGET NIQVTTDLMR FVLAANLLGF PAISVPVGYD KEGLPIGLQI MGRPWAEATV LGLAAAVEEL APVTKKPAIF
601: YDILNTN

Arabidopsis Description

FAAHFatty acid amide hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q7XJJ7]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.