Factsheet for PGSC0003DMT400021967

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	85.58	26.73
PGSC0003DMT400093880	Potato	cytosol	54.81	13.19
PGSC0003DMT400014757	Potato	endoplasmic reticulum	54.81	9.66
PGSC0003DMT400054702	Potato	mitochondrion	40.38	8.2
PGSC0003DMT400008093	Potato	cytosol	39.42	6.63
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	37.5	6.41
PGSC0003DMT400036918	Potato	plastid	32.69	5.45
PGSC0003DMT400008084	Potato	cytosol	8.65	2.72
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	7.69	2.31
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	5.77	2.18
PGSC0003DMT400031298	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400021967	EnsemblPlantsGene:PGSC0003DMG400008518	Gene3D:3.90.1300.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040
GO:GO:0016787	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	InterPro:IPR036928	KEGG:00970+6.3.5.7
PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	PFAM:PF01425	PGSC:PGSC0003DMG400008518	SEG:seg	SUPFAM:SSF75304
UniParc:UPI000295BC2D	UniProt:M1AFY4	MapMan:35.1	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008518]

Coordinates

chr7:+:7602027..7604474

Molecular Weight (calculated)

10792.0 Da

IEP (calculated)

7.439

GRAVY (calculated)

0.432

Length

104 amino acids

Sequence
(BLAST)

001: MSLLECFRIT GENVHYGTPT NPKLPSHIPG GSSSGSAVAV AAELVDFALG TDTTGCIRVP VAFCGVFGFR PSHGAVSTIG VLPVSQSLDS IGIKYGSRFL
101: YFLA

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.