Factsheet for PGSC0003DMT400054703

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, cytoskeleton, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	42.94	35.99
KRG98874	Soybean	mitochondrion	39.77	29.05
VIT_12s0028g01330.t01	Wine grape	mitochondrion	44.96	28.57
KRH46093	Soybean	mitochondrion	44.38	28.36
Bra026512.1-P	Field mustard	cytosol	14.7	28.18
CDY46509	Canola	cytosol	14.7	28.18
CDY04173	Canola	plastid	43.52	28.07
CDY59872	Canola	plastid	43.52	28.07
AT3G25660.1	Thale cress	plastid	42.94	27.75
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	42.36	27.17
EES11532	Sorghum	plastid	41.79	26.8
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	41.79	26.8
Zm00001d002104_P001	Maize	mitochondrion, plastid	42.07	26.74
TraesCS2D01G521500.1	Wheat	plastid	41.5	26.62
GSMUA_Achr9P09040_001	Banana	plastid	42.07	25.22
Os04t0643200-00	Rice	plastid	38.04	24.72
PGSC0003DMT400054702	Potato	mitochondrion	17.29	11.72
PGSC0003DMT400008084	Potato	cytosol	10.95	11.48
HORVU5Hr1G093800.2	Barley	mitochondrion, plastid	10.95	10.33
PGSC0003DMT400093880	Potato	cytosol	9.8	7.87
PGSC0003DMT400021967	Potato	cytosol	2.31	7.69
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	13.26	7.57
PGSC0003DMT400008093	Potato	cytosol	12.68	7.12
PGSC0003DMT400036918	Potato	plastid	10.95	6.09
PGSC0003DMT400014757	Potato	endoplasmic reticulum	7.78	4.58
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	3.75	3.9
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	2.02	2.55
PGSC0003DMT400031298	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:15.5.15	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0016787	InterPro:IPR013087	InterPro:IPR036928	UniProt:M1BWR1	PFAM:PF01425	PFAM:PF13912
EnsemblPlantsGene:PGSC0003DMG402021239	PGSC:PGSC0003DMG402021239	EnsemblPlants:PGSC0003DMT400054703	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR11895
PANTHER:PTHR11895:SF141	SUPFAM:SSF75304	UniParc:UPI000295748C	InterPro:Znf_C2H2_type	SEG:seg	:

Description

Glutamyl-tRNA(Gln) amidotransferase subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG402021239]

Coordinates

chr10:-:2795984..2801036

Molecular Weight (calculated)

38152.0 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.441

Length

347 amino acids

Sequence
(BLAST)

001: MAHQKLIAGG GGGDDQSTTS TTTNATGTTS SGNGNRSGRT HECLICHKCF PTGQALGGHK RCHYDGDNAN SSVSTSVGVT SEEDVGSTIS HPDFDLNIPV
101: LPKFYPGFGS GEDEREMSRV GVELIEIEKK VTEEMRDGDD EVKRIWNRRE MSRVGVELIE IEKKVTEEMR DGDDEVKRIW NRVDTDHNLD KMYGKQVFAD
201: ELNSLYGESR AGGLGSEVKM RILMGTYALS AGYYDAYYKR ALQVRTLVRE SFRAALDEND ILISPAAPSA AYKIGEKKND PLSMYAGDIM TVNVNLAGLP
301: ALVLPCGFVD CSSVSLPVGV QMISAAFEEE DWRIKIRANR KFITLNI

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.