CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04173	Canola	plastid	98.51	98.51
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	75.65	98.31
AT3G25660.1	Thale cress	plastid	91.82	91.99
CDY46509	Canola	cytosol	26.77	79.56
VIT_12s0028g01330.t01	Wine grape	mitochondrion	75.65	74.54
HORVU5Hr1G093800.2	Barley	mitochondrion, plastid	50.56	73.91
KRG98874	Soybean	mitochondrion	65.24	73.89
Solyc10g007840.2.1	Tomato	plastid	72.12	73.35
KRH46093	Soybean	mitochondrion	73.23	72.56
EES11532	Sorghum	plastid	67.66	67.28
Zm00001d002104_P001	Maize	mitochondrion, plastid	68.03	67.03
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	66.54	66.17
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	66.36	65.99
TraesCS2D01G521500.1	Wheat	plastid	66.17	65.8
GSMUA_Achr9P09040_001	Banana	plastid	69.89	64.94
Os04t0643200-00	Rice	plastid	60.22	60.67
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	28.07	43.52
CDY06342	Canola	cytosol	17.29	22.04
CDY22653	Canola	cytosol	17.1	21.8
CDY58262	Canola	cytosol	24.35	21.27
CDX84527	Canola	cytosol	24.16	21.1
CDY46805	Canola	cytosol	23.42	20.62
CDY31318	Canola	cytosol	23.23	20.39
CDY03602	Canola	cytosol, plastid	10.78	18.95
CDX70030	Canola	plastid	20.45	17.0
CDX98979	Canola	plastid	20.07	16.64
CDX93679	Canola	mitochondrion	18.03	16.14
CDY21581	Canola	cytosol	17.47	15.59
CDY40591	Canola	endoplasmic reticulum, golgi	17.29	15.5
CDX69906	Canola	cytosol, plastid	17.1	15.26
CDY51926	Canola	endoplasmic reticulum	16.73	15.23
CDX75952	Canola	endoplasmic reticulum	16.36	14.92
CDX95800	Canola	endoplasmic reticulum	16.54	11.63
CDX92180	Canola	endoplasmic reticulum	16.36	11.03
CDX69905	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:17.2.8.1	Gene3D:3.90.1300.10	GO:A0A078J8R4	UniProt:A0A078J8R4	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_CS	InterPro:Amidase_dom	EnsemblPlants:CDY59872	ProteinID:CDY59872	ProteinID:CDY59872.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0016874	GO:GO:0016884	GO:GO:0019538
GO:GO:0030956	GO:GO:0032543	GO:GO:0050567	GO:GO:0070681	EnsemblPlantsGene:GSBRNA2T00027811001	InterPro:GatA
InterPro:IPR036928	HAMAP:MF_00120	PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895	PANTHER:PTHR11895:SF141
MetaCyc:PWY-5921	SUPFAM:SSF75304	TIGRFAMs:TIGR00132	UniParc:UPI0004EF3767	SEG:seg	:

Description

BnaC09g52600DGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078J8R4]

Coordinates

chrLK033814:+:34649..37132

Molecular Weight (calculated)

57076.2 Da

IEP (calculated)

5.736

GRAVY (calculated)

-0.032

Length

538 amino acids

Sequence
(BLAST)

001: MLSTLQPPRS LTLLPFRRLH GSKTIASLAS SSPTLDASSV SPPQSQILTT RRSLLSGETT ASEIAKSYLS RIRLTEPQLK CFLHVSENVL KEAQEIDQRI
101: SRGEEVGPLA GVVIGVKDNI CTEGMPSTAA SRILEHYRPP FDATAVKKIK EMGGIVVGKT NMDEFGMGST TEASAFQVTA NPWDLTRVPG GSSGGSAAAV
201: AANQCMVSLG SDTGGSVRQP ASFCGVVGLK PTYGRVSRFG LMAYASSLDV IGCFGSTVAD AGMLLHAVSG YDRFDSTSSK QDVPEFESQF LSMDSFESKP
301: LKGVRVGLIR ETLEEGVDSG VRSATQEAAS HLEALGCLVT EVSLPSFSLG LPAYYVIASS ESSSNLSRYD GVRYGNQVMA DELNKLYDCS RGQGFGGEVK
401: MRILMGTYAL SAGYYDAYYK RAQQVRTLIR KDFKAALDHN DILISPAAPS AAYKIGEKKD DPLAMYAGDI MTVNVNLAGL PAIVLPCGLV EGGPSGLPVG
501: LQMIGAAFDE ETLLKVGHIF EQTLNGSGFV PPTLPNVA

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.