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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51926 Canola endoplasmic reticulum 70.2 90.86
CDX75952 Canola endoplasmic reticulum 69.93 90.68
CDX92180 Canola endoplasmic reticulum 94.38 90.48
AT3G17970.1 Thale cress endoplasmic reticulum 68.89 89.47
CDX93679 Canola mitochondrion 61.96 78.87
CDY40591 Canola endoplasmic reticulum, golgi 61.57 78.5
VIT_17s0000g02400.t01 Wine grape endoplasmic reticulum 54.51 70.68
Solyc03g118690.2.1 Tomato plastid 52.29 67.8
PGSC0003DMT400014757 Potato endoplasmic reticulum 51.9 67.29
KRH41841 Soybean endoplasmic reticulum 51.63 66.84
KRH60539 Soybean extracellular 51.11 66.61
Os03t0707900-01 Rice plasma membrane 46.67 60.92
TraesCS4D01G040700.1 Wheat endoplasmic reticulum 46.01 59.86
EER91017 Sorghum endoplasmic reticulum, golgi 45.75 59.52
TraesCS4A01G270900.1 Wheat endoplasmic reticulum 45.49 59.18
GSMUA_Achr1P21290_001 Banana endoplasmic reticulum 45.23 58.45
Zm00001d033682_P001 Maize endoplasmic reticulum, golgi, plasma membrane 45.88 58.31
TraesCS4B01G043200.1 Wheat endoplasmic reticulum 44.05 57.51
Zm00001d013463_P001 Maize golgi, plasma membrane, vacuole 29.15 50.45
CDY21581 Canola cytosol 39.74 50.41
CDX69906 Canola cytosol, plastid 39.48 50.08
HORVU4Hr1G006870.1 Barley plastid 41.44 48.62
CDY22653 Canola cytosol 25.49 46.21
CDY06342 Canola cytosol 25.36 45.97
CDY03602 Canola cytosol, plastid 16.34 40.85
CDY46509 Canola cytosol 4.44 18.78
CDY59872 Canola plastid 11.63 16.54
CDY04173 Canola plastid 11.5 16.36
CDY31318 Canola cytosol 12.94 16.15
CDY46805 Canola cytosol 12.42 15.55
CDX84527 Canola cytosol 12.42 15.42
CDY58262 Canola cytosol 12.16 15.1
CDX98979 Canola plastid 10.33 12.17
CDX70030 Canola plastid 10.07 11.9
CDX69905 Canola mitochondrion 4.44 10.9
Protein Annotations
KEGG:00970+6.3.5.7Gene3D:1.25.40.10MapMan:11.1.2.1.2Gene3D:2.60.40.150Gene3D:3.90.1300.10GO:A0A078E1Z0
InterPro:AS_sfInterPro:AmidaseInterPro:Amidase_domInterPro:C2_domInterPro:C2_domain_sfEnsemblPlants:CDX95800
ProteinID:CDX95800ProteinID:CDX95800.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0004040
GO:GO:0005488GO:GO:0005515GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00101740001InterPro:IPR000008InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734InterPro:IPR035892InterPro:IPR036928PFAM:PF00168PFAM:PF01425
PFAM:PF13414PFscan:PS50004PFscan:PS50005PFscan:PS50293PANTHER:PTHR11895PANTHER:PTHR11895:SF39
MetaCyc:PWY-5921SMART:SM00028SMART:SM00239SUPFAM:SSF48452SUPFAM:SSF49562SUPFAM:SSF75304
SignalP:SignalP-noTMTMHMM:TMhelixInterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI0004EF3D30
SEG:seg:::::
Description
BnaC05g35510D
Coordinates
chrLK031891:-:358092..363303
Molecular Weight (calculated)
83966.0 Da
IEP (calculated)
8.037
GRAVY (calculated)
-0.201
Length
765 amino acids
Sequence
(BLAST)
001: MASHASNLWV LLGLGIAGIL LAAKKLKKTI REDFGAFVDK LLLLPPPQPA PPKAPHPLTG LSFAISDVFD VTGYVTGFGH PDWVKTHEAA SSTCPVVSTL
101: VEGGATCVGK TVVDELAFSI SGENKHYESP TNPAAHDRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSHGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL HLPFATQRNP RQIIVADDYF QLLKIPVDRI TQVVTKSAEK LFGRQSLKHQ NLESYFESKV PSLKEFTRTK AIANTKAPTS
301: RLLANVMQLL QRHEFLQDHG DWINTVKPAI DPVISSQVCE NAELTNEEIE NLNAIRNQTR VAINSLLKDD GILVIPTMPT LPPKLGSKEI ISEDYQNRAS
401: SLLSVASISG CCQVTVPLGR HEKCPVSVSF IGRHGGDRFL LDTVQTMYAS LQENSSIVTD PKSSKKTISQ EESAEIAKEK GNQAFKEKQW QKAIGLYSEA
501: IKLNENNATY YSNRAAAYLE IGSFLLAEED CTKAIALDKK NVKAYLRRGT AREMLGEYRE AMDDFRHALV LEPNNKRASL SAERLRKKIN QREMTTAGSL
601: MNNLLGLLRI RIKRGVNLAV RDINSSDPYV VVKMGKQKLK TRVINKDVNP EWNEDLTLSV TDPTLTVLLT VYDHDMFSKD DKMGDAEFEI KPYIEALKMH
701: LDGLPSGTIV TTVQPCRRNC LAEESKVTWV DGKLVQDLVL RLRHVECGEV EAQLQWIDLP GSKGL
Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)
001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ
Arabidopsis Description
OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.