Factsheet for VIT_17s0000g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118690.2.1	Tomato	plastid	73.73	73.73
PGSC0003DMT400014757	Potato	endoplasmic reticulum	73.39	73.39
KRH41841	Soybean	endoplasmic reticulum	73.05	72.93
AT3G17970.1	Thale cress	endoplasmic reticulum	72.2	72.33
KRH60539	Soybean	extracellular	71.69	72.06
CDX75952	Canola	endoplasmic reticulum	70.34	70.34
CDY51926	Canola	endoplasmic reticulum	69.66	69.54
Bra001692.1-P	Field mustard	endoplasmic reticulum	69.49	69.37
CDY40591	Canola	endoplasmic reticulum, golgi	68.47	67.33
Bra018737.1-P	Field mustard	mitochondrion	68.47	67.22
CDX93679	Canola	mitochondrion	68.47	67.22
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	65.42	65.2
EER91017	Sorghum	endoplasmic reticulum, golgi	63.39	63.61
Os03t0707900-01	Rice	plasma membrane	62.37	62.8
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	61.69	61.9
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	63.05	61.79
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	60.68	60.88
TraesCS4B01G043200.1	Wheat	endoplasmic reticulum	58.64	59.04
CDX95800	Canola	endoplasmic reticulum	70.68	54.51
VIT_14s0128g00320.t01	Wine grape	cytosol	39.83	54.27
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	40.34	53.85
VIT_12s0028g00300.t01	Wine grape	cytosol	55.08	53.54
CDX92180	Canola	endoplasmic reticulum	71.53	52.88
HORVU4Hr1G006870.1	Barley	plastid	55.93	50.61
VIT_12s0028g01330.t01	Wine grape	mitochondrion	16.44	17.77
VIT_07s0031g02700.t01	Wine grape	golgi	18.31	17.7
VIT_03s0097g00620.t01	Wine grape	cytosol, nucleus, plasma membrane	17.63	17.13
VIT_15s0024g00980.t01	Wine grape	cytosol	13.39	14.5
VIT_15s0024g01020.t01	Wine grape	cytosol	13.22	13.73
VIT_00s0283g00010.t01	Wine grape	mitochondrion	3.9	13.37
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	13.73	12.96

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	EntrezGene:100244007	wikigene:100244007	MapMan:11.2.1.2.1	MapMan:23.1.2.4
Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	ProteinID:CBI15572	ProteinID:CBI15572.3
UniProt:D7SJB1	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0031359
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928	EntrezGene:LOC100244007	wikigene:LOC100244007
PFAM:PF01425	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF39	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF75304	TIGR:TC70129	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00015C9850	ArrayExpress:VIT_17s0000g02400	EnsemblPlantsGene:VIT_17s0000g02400	EnsemblPlants:VIT_17s0000g02400.t01	unigene:Vvi.10723
RefSeq:XP_002282402	RefSeq:XP_002282402.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:2109284..2134572

Molecular Weight (calculated)

64678.4 Da

IEP (calculated)

8.653

GRAVY (calculated)

-0.203

Length

590 amino acids

Sequence
(BLAST)

001: MASSSANLWV LLGLGLAGVL LMTRKLKKTI REDFGAFVQR LQLLPPPQPA PPKAPHPLTN LSFAVSDVFD IEGYVTGFGN PDWARTHDTA SRTSPVVSAL
101: VEGGATCTGK TVVDEMAYSI NGENKHYGTP TNPAAPSRIP GGSSSGAAVA VAANFVDFSL GLDTVGGVRV PAAFCGVIGF RPSHGAVSHM GIIHVSSSLD
201: TVGWFAKDPS ILRRVGHVLL QLTYAVQRSP RQIIFADDCF QSLRIPVDRV YQVVLKSTEK LFGRQVLKRE NLENYLDSKV PSLKAFHSQK TNGETRNSLI
301: RSLVKIMHCL QRHEFKHNHE EWINSVKPIL DASISSQLHD VLEVADTEIE NCQSSRMEIR SALNSLLKDD GILVIPTVAD PPPKLGGKES LSEEYQNRTL
401: GLLSIASMSG CCQVTVPLGL YDKYPVSVSF MARHGGDRFL LDTVQTMYAS LQEQADIAAK SKLSSNAVDR ETSAEIAKEK GNQAFKDKQW QKAVGFYTEA
501: IKLSGNNATY YSNRAAAYLE MGSFLQAEAD CTEAINLDKK NVKAYLRRGT AREMLGYYKD AIEDFRYALV LEPTNKRASL SADRLKKLFQ

Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)

001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ

Arabidopsis Description

OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.