Factsheet for PGSC0003DMT400014757

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118690.2.1	Tomato	plastid	95.59	95.59
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	73.39	73.39
AT3G17970.1	Thale cress	endoplasmic reticulum	68.98	69.1
CDX75952	Canola	endoplasmic reticulum	66.61	66.61
KRH60539	Soybean	extracellular	66.27	66.61
KRH41841	Soybean	endoplasmic reticulum	66.27	66.16
CDY51926	Canola	endoplasmic reticulum	65.93	65.82
Bra001692.1-P	Field mustard	endoplasmic reticulum	65.59	65.48
Bra018737.1-P	Field mustard	mitochondrion	66.1	64.89
CDY40591	Canola	endoplasmic reticulum, golgi	65.93	64.83
CDX93679	Canola	mitochondrion	65.93	64.73
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	61.53	61.32
EER91017	Sorghum	endoplasmic reticulum, golgi	60.0	60.2
Os03t0707900-01	Rice	plasma membrane	59.49	59.9
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	58.47	58.67
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	59.83	58.64
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	57.8	57.99
TraesCS4B01G043200.1	Wheat	endoplasmic reticulum	55.93	56.31
PGSC0003DMT400021967	Potato	cytosol	9.66	54.81
CDX95800	Canola	endoplasmic reticulum	67.29	51.9
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	38.64	51.58
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	28.81	51.05
CDX92180	Canola	endoplasmic reticulum	66.78	49.37
HORVU4Hr1G006870.1	Barley	plastid	53.9	48.77
PGSC0003DMT400093880	Potato	cytosol	32.88	44.91
PGSC0003DMT400008084	Potato	cytosol	9.15	16.31
PGSC0003DMT400054702	Potato	mitochondrion	14.07	16.21
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	16.61	16.12
PGSC0003DMT400008093	Potato	cytosol	16.44	15.7
PGSC0003DMT400036918	Potato	plastid	13.9	13.14
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	5.42	11.64
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	4.58	7.78
PGSC0003DMT400031298	Potato	cytosol	1.36	5.0

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	EntrezGene:102595493	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0031359
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928	UniProt:M1A4U3	PFAM:PF01425
PFAM:PF07719	EnsemblPlantsGene:PGSC0003DMG400005752	PGSC:PGSC0003DMG400005752	EnsemblPlants:PGSC0003DMT400014757	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR11895	PANTHER:PTHR11895:SF39	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304	TMHMM:TMhelix
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI000296C868	RefSeq:XP_006341523.1
SEG:seg	:	:	:	:	:

Description

Amidase [Source:PGSC_GENE;Acc:PGSC0003DMG400005752]

Coordinates

chr3:+:58221979..58230842

Molecular Weight (calculated)

63981.5 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.183

Length

590 amino acids

Sequence
(BLAST)

001: MASQSANLWV LLGLGLAGIL IMTRKLKKAV KADFGAFVER LKLLPPPQPP PPKAPHPLTG LSFAISDVFD VNGSVTGFGN PDWSRTHEPA SQTSTVVTTL
101: VEGGATCTGR TVVDDMAFGI SGEQIHFDTP TNPAAPARMP GGSSSGAAVA VAANFVDFSL GTDAVGGVRV PAAYCGVLGF RPSHGTVSHT GIIPVSASLD
201: TVGWFARDPS ILRRVGHVLL QVPFVAQRNP RNVVIADDCF QLLKSPGDCV SQAVTKAVEK LFGRQILRHE NLEAYLNSKV PSLKLFADKK FNGERKSSST
301: NLLAYAMHML RRHEFKQNHL EWIDDGKPNL DPVISSQMQC ALEITDTIID SCHAIRNEMR SALNDLLKDD GILVIPTVAE PPPKTGAKEI QSEDYQIRSC
401: SFSSIASMSG GCQVCVPVGF HDKCPISVSF VARQGGDRFL LDTIQTMYAD LQEQAELATK SSASGNALSK ETSAEMAKEK GNQAFKEKQW PKAIGFYTEA
501: IKLNGNSATY FSNRAAAHLE MRNFLQAEAD SSKAIDLDKK NVKAYLRRGT AREMLGYYKE AIEDFRYALV LEPTNKRASL SADRLKTTFP

Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)

001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ

Arabidopsis Description

OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.