Factsheet for PGSC0003DMT400042984

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019491
PGSC0003DMT400051986

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT5G09420.1	PGSC0003DMT400019491	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021967	Potato	cytosol	26.73	85.58
KRH58264	Soybean	golgi, plasma membrane	64.86	66.67
Solyc10g047300.1.1	Tomato	plastid	94.89	52.84
VIT_12s0028g00300.t01	Wine grape	cytosol	69.07	37.89
KRH10544	Soybean	golgi	66.07	36.79
KRH43896	Soybean	cytosol, endoplasmic reticulum	65.47	36.45
AT5G09420.1	Thale cress	cytosol	64.56	35.66
CDY21581	Canola	cytosol	62.76	34.66
GSMUA_Achr9P14860_001	Banana	mitochondrion	61.26	32.74
PGSC0003DMT400093880	Potato	cytosol	42.34	32.64
TraesCS6A01G318800.1	Wheat	plastid	57.66	31.53
KXG30729	Sorghum	plastid	57.96	31.43
TraesCS6D01G298000.1	Wheat	plastid	57.36	31.36
TraesCS6B01G349000.1	Wheat	plastid	57.36	31.36
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	56.16	30.51
Zm00001d018098_P005	Maize	plasma membrane	56.16	30.46
PGSC0003DMT400014757	Potato	endoplasmic reticulum	51.05	28.81
HORVU6Hr1G078210.1	Barley	mitochondrion	39.04	23.3
Bra009383.1-P	Field mustard	cytosol, plastid	62.16	22.43
PGSC0003DMT400008091	Potato	cytosol, plasma membrane, plastid	12.61	15.27
PGSC0003DMT400054702	Potato	mitochondrion	23.42	15.23
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	26.13	14.31
PGSC0003DMT400008093	Potato	cytosol	25.53	13.75
PGSC0003DMT400036918	Potato	plastid	21.02	11.22
PGSC0003DMT400008084	Potato	cytosol	9.91	9.97
PGSC0003DMT400031298	Potato	cytosol	2.4	5.0
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	3.9	3.75
KRH58262	Soybean	cytosol	1.2	1.44

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	InterPro:IPR036928	UniProt:M1BDW3	PFAM:PF01425	EnsemblPlantsGene:PGSC0003DMG400016669	PGSC:PGSC0003DMG400016669
EnsemblPlants:PGSC0003DMT400042984	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	SUPFAM:SSF75304	TMHMM:TMhelix	UniParc:UPI0002964E5C
SEG:seg	:	:	:	:	:

Description

Amidase [Source:PGSC_GENE;Acc:PGSC0003DMG400016669]

Coordinates

chr10:+:29813810..29821317

Molecular Weight (calculated)

35849.9 Da

IEP (calculated)

9.943

GRAVY (calculated)

0.179

Length

333 amino acids

Sequence
(BLAST)

001: MTKLNVSNPK VWVVIGVGFA GILILAEVNR RRLKARNSIK QDFGAFIERI ELLPFPQPPP PAARLSLSGL SFAIKDNIDV KEYVTGFGSP AWKRMHEAAT
101: KTAMVVTALL KNGSTCVGKT IMDEFGLGIT GENVHYGTPT NPKLPSHIPG GSSSGSAVAV AAELVDFALG TDTTGCIRVP VAFCGVFGFR PSHGAVSTIG
201: VLPVSQSLDS IGWLARDPSV LHRVGHVLLQ IPSIEPKRTR CFVIADDLFQ LCNVPKQKTV YVVTKVIEKL SGYQTPKHLN LGQYIASNVP SLKGFIEQST
301: IQQNGMSTLR ALSSVMFLLQ RSCTCHTLNI VLG

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.