Factsheet for TraesCS6D01G298000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G188600.1
TraesCS3B01G217800.1
TraesCS3D01G192000.1
TraesCS4A01G025200.1
TraesCS4A01G129200.1
TraesCS4B01G175300.1
TraesCS4B01G278900.1
TraesCS4D01G177200.1
TraesCS4D01G277400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	TraesCS3A01G188600.1	AT3G20000.1	17981999
AT5G09420.1	TraesCS3B01G217800.1	AT3G20000.1	17981999
AT5G09420.1	TraesCS3D01G192000.1	AT3G20000.1	17981999
AT5G09420.1	TraesCS4A01G129200.1	AT3G20000.1	17981999
AT5G09420.1	TraesCS4B01G175300.1	AT3G20000.1	17981999
AT5G09420.1	TraesCS4D01G177200.1	AT3G20000.1	17981999
AT5G09420.1	TraesCS4A01G025200.1	AT3G54660.1	17981999
AT5G09420.1	TraesCS4B01G278900.1	AT3G54660.1	17981999
AT5G09420.1	TraesCS4D01G277400.1	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G349000.1	Wheat	plastid	98.69	98.69
TraesCS6A01G318800.1	Wheat	plastid	98.36	98.36
HORVU6Hr1G078210.1	Barley	mitochondrion	77.5	84.59
KXG30729	Sorghum	plastid	78.0	77.36
Zm00001d018098_P005	Maize	plasma membrane	77.18	76.55
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	76.85	76.35
KRH58262	Soybean	cytosol	27.91	61.15
GSMUA_Achr9P14860_001	Banana	mitochondrion	62.4	61.0
VIT_12s0028g00300.t01	Wine grape	cytosol	59.77	59.97
KRH10544	Soybean	golgi	56.81	57.86
KRH43896	Soybean	cytosol, endoplasmic reticulum	56.81	57.86
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	31.36	57.36
Solyc10g047300.1.1	Tomato	plastid	56.16	57.19
CDY21581	Canola	cytosol	56.32	56.88
KRH58264	Soybean	golgi, plasma membrane	29.72	55.86
AT5G09420.1	Thale cress	cytosol	55.17	55.72
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	44.17	45.75
TraesCS2D01G573300.1	Wheat	cytosol	30.54	41.43
TraesCS2D01G573400.3	Wheat	cytosol, endoplasmic reticulum, peroxisome	28.57	40.18
TraesCS5D01G083700.1	Wheat	cytosol	19.05	38.54
Bra009383.1-P	Field mustard	cytosol, plastid	56.98	37.59
TraesCS2D01G521500.1	Wheat	plastid	15.76	17.74
TraesCS1D01G421100.1	Wheat	golgi	17.73	17.7
TraesCS4D01G108100.1	Wheat	cytosol	17.08	17.19
TraesCS2D01G040000.1	Wheat	cytosol	16.09	16.44
TraesCS2D01G039600.2	Wheat	mitochondrion, nucleus, peroxisome	16.75	16.27
TraesCS2D01G039700.2	Wheat	cytoskeleton, cytosol, peroxisome	16.42	16.23
TraesCS2D01G039900.1	Wheat	mitochondrion	14.78	14.83
TraesCS3D01G341200.1	Wheat	mitochondrion, vacuole	14.78	14.04

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.2.1.7	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928	PFAM:PF01425	PFAM:PF13414	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304
TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS6D01G298000	EnsemblPlants:TraesCS6D01G298000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:408896571..408904423

Molecular Weight (calculated)

66383.8 Da

IEP (calculated)

9.216

GRAVY (calculated)

-0.174

Length

609 amino acids

Sequence
(BLAST)

001: MDSSARSGAT GSSNPRAWIV AGVAVAGVIV LAEVARRRRR WLRGKSSPPP YSGAFCDRLE LAPPPQPPPP AARQQLPDLT FAVSDNFEIE GYVAGFGNPD
101: WKRTHKAASH TAAAVKALLK QGATCVGRTV MDELGFGVTG ENLHCGTPIN PASPSVVPGG SCSGSAVAVS LQLVEFALGT DTTGDLRIPA SFCGVLCFRP
201: SHGVVSTLGT LPNSHSLDTI GWLARDPHIL SRVGDALLPA AACGLKGKRQ LVFADDCFEL LKIPNQKTVD VIENAVRTLP YGFQPPKHIN IGQYISSNVP
301: SLKEFCEPST KLQEGKSALK ALCTVMLLLQ RYEFKANHED WVNTVKPKLG LEVSTRVLQA VNFTDDNIKS LYIVRTEWRA ALKNLLKDTG ILVLPTMAGH
401: PLKRNSKQRL SSEFEDKMYA FVSIAALSGC CQATVPLGNH NDHPISISFV AAHGSDKFLL RAILDMHSAI QEQIVLASKL ALPPVIDRDV DTSELLKEKG
501: NNSFKRKQWS KAIEFYSGAI KLNDTNATYY CNRAAAYLEL GRFKQAEADC DQALLLDKKN VKAYLRRGTA KESVLNYQEA LQDFRHALAL EPQNRTALAA
601: EKRLQKHLR

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.