Factsheet for TraesCS3B01G217800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G429800.1
TraesCS3B01G467700.1
TraesCS3D01G425100.1
TraesCS6A01G318800.1
TraesCS6B01G349000.1
TraesCS6D01G298000.1
TraesCS7A01G130600.1
TraesCS7B01G030900.1
TraesCS7D01G130000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	TraesCS3A01G429800.1	AT1G27390.1	17981999
AT3G20000.1	TraesCS3B01G467700.1	AT1G27390.1	17981999
AT3G20000.1	TraesCS3D01G425100.1	AT1G27390.1	17981999
AT3G20000.1	TraesCS7A01G130600.1	AT2G19080.1	17981999
AT3G20000.1	TraesCS7B01G030900.1	AT2G19080.1	17981999
AT3G20000.1	TraesCS7D01G130000.1	AT2G19080.1	17981999
AT3G20000.1	TraesCS3A01G429800.1	AT3G27080.1	17981999
AT3G20000.1	TraesCS3B01G467700.1	AT3G27080.1	17981999
AT3G20000.1	TraesCS3D01G425100.1	AT3G27080.1	17981999
AT3G20000.1	TraesCS6A01G318800.1	AT5G09420.1	17981999
AT3G20000.1	TraesCS6B01G349000.1	AT5G09420.1	17981999
AT3G20000.1	TraesCS6D01G298000.1	AT5G09420.1	17981999
AT3G20000.1	TraesCS3A01G429800.1	AT5G40930.1	17981999
AT3G20000.1	TraesCS3B01G467700.1	AT5G40930.1	17981999
AT3G20000.1	TraesCS3D01G425100.1	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	98.8	98.8
TraesCS3A01G188600.1	Wheat	cytosol	96.41	96.12
HORVU3Hr1G039040.6	Barley	mitochondrion	87.43	80.22
KXG32258	Sorghum	plastid	66.17	65.58
TraesCS4B01G175300.1	Wheat	cytosol	65.27	64.88
VIT_03s0097g00590.t01	Wine grape	cytosol	58.98	63.75
Zm00001d008242_P001	Maize	mitochondrion	64.37	63.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	62.28	62.28
GSMUA_Achr8P01650_001	Banana	plastid	59.88	61.92
KRH41747	Soybean	mitochondrion	56.89	61.29
KRH60449	Soybean	mitochondrion	56.29	61.04
GSMUA_Achr10P...	Banana	extracellular, vacuole	34.13	60.64
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	56.29	60.26
Solyc06g007710.2.1	Tomato	plastid	55.09	58.6
CDY33440	Canola	cytosol	53.89	58.06
CDY42223	Canola	cytosol	53.59	57.74
CDX82267	Canola	cytosol	53.29	57.61
AT3G20000.1	Thale cress	cytosol	53.29	57.61
Bra038249.1-P	Field mustard	cytosol	53.29	57.42
CDY36066	Canola	cytosol	52.69	56.96
AT1G50400.1	Thale cress	cytosol	52.4	56.45
CDY24571	Canola	cytosol	50.0	54.05
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	56.59	53.85
CDY25368	Canola	cytosol	49.1	53.07
Bra035826.1-P	Field mustard	cytosol	49.1	53.07
Zm00001d040440_P001	Maize	plastid	28.44	51.91
GSMUA_Achr10P...	Banana	plastid	32.63	50.93
PGSC0003DMT400051986	Potato	cytosol, plastid	10.48	47.95
Os01t0276200-00	Rice	mitochondrion	59.28	47.83
CDY37141	Canola	cytosol	44.91	46.88
Bra018846.1-P	Field mustard	cytosol	44.01	45.94
CDY22793	Canola	cytosol	43.71	45.62

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085
InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
InterPro:Tom40	EnsemblPlantsGene:TraesCS3B01G217800	EnsemblPlants:TraesCS3B01G217800.1	TIGR:cd07305	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:260380508..260385437

Molecular Weight (calculated)

36930.8 Da

IEP (calculated)

5.226

GRAVY (calculated)

-0.428

Length

334 amino acids

Sequence
(BLAST)

001: MGSTFSHEDA PPPLSPAPAD APPLPYAPMP PPPLPPQEED KAAEDDKVDY LNLRCPIPYE EAQREASMTL KTDVFEGFRF DFVKPVSQVL FLSHSASMGS
101: MEVPSQGPEV IKVPTSQYEF GANYIDPKLM LIGRIAPDGR LNGRVKYEVT ENLCAQMNAQ LTNEPGYSQG MFNLDYKGKD FRTQCQVGNN GFYGGNYIQS
201: VTKNLSLGTE GFWLQQQRKS GVGFLARYDT KNMVATGQIA STGLVSLSYV QKVSNKVSLA TDFMYNHMSK DVTASVGYDY IMRQSRLRGN VDTNGAVSAL
301: LEEKINPYAT LVLSAEIDHW KKDNKFGFGV RVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.