Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g068130.2.1 | |
| Solyc02g094140.2.1 | |
| Solyc07g009320.2.1 | |
| Solyc10g047300.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 20.83 | 89.04 |
| Solyc06g007710.2.1 | Tomato | plastid | 88.14 | 87.58 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 86.22 | 87.06 |
| KRH60449 | Soybean | mitochondrion | 79.81 | 80.84 |
| KRH41747 | Soybean | mitochondrion | 80.13 | 80.65 |
| CDY33440 | Canola | cytosol | 74.04 | 74.52 |
| CDY42223 | Canola | cytosol | 73.4 | 73.87 |
| Bra038249.1-P | Field mustard | cytosol | 73.08 | 73.55 |
| CDX82267 | Canola | cytosol | 72.44 | 73.14 |
| CDY36066 | Canola | cytosol | 72.44 | 73.14 |
| AT3G20000.1 | Thale cress | cytosol | 71.79 | 72.49 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 72.76 | 70.28 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 41.67 | 69.15 |
| EER94935 | Sorghum | cytosol, plastid | 72.44 | 67.87 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 72.44 | 67.66 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 72.76 | 67.56 |
| Zm00001d028971_P001 | Maize | cytosol | 72.12 | 67.37 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 72.76 | 67.36 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 72.44 | 67.26 |
| TraesCS4A01G129200.1 | Wheat | plastid | 72.44 | 67.26 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 72.44 | 67.26 |
| Zm00001d047566_P008 | Maize | cytosol | 71.47 | 66.97 |
| CDY24571 | Canola | cytosol | 66.03 | 66.67 |
| Bra035826.1-P | Field mustard | cytosol | 65.71 | 66.34 |
| CDY25368 | Canola | cytosol | 65.71 | 66.34 |
| AT1G50400.1 | Thale cress | cytosol | 60.58 | 60.97 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 66.67 | 59.26 |
| KXG32258 | Sorghum | plastid | 63.46 | 58.75 |
| Zm00001d008242_P001 | Maize | mitochondrion | 62.18 | 57.4 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 60.9 | 56.89 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 60.58 | 56.42 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 60.26 | 56.29 |
| CDY37141 | Canola | cytosol | 57.37 | 55.94 |
| GSMUA_Achr10P... | Banana | plastid | 38.14 | 55.61 |
| CDY22793 | Canola | cytosol | 56.09 | 54.69 |
| Bra018846.1-P | Field mustard | cytosol | 56.09 | 54.69 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 59.94 | 51.37 |
| Zm00001d040440_P001 | Maize | plastid | 29.17 | 49.73 |
| Os01t0276200-00 | Rice | mitochondrion | 59.62 | 44.93 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:23.2.1.6 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008320 | GO:GO:0009987 | GO:GO:0015266 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0030150 | GO:GO:0055085 | InterPro:IPR023614 | UniProt:K4CAD5 | PFAM:PF01459 | PANTHER:PTHR10802 |
| PANTHER:PTHR10802:SF2 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | EnsemblPlantsGene:Solyc06g082800.2 | EnsemblPlants:Solyc06g082800.2.1 | InterPro:Tom40 |
| UniParc:UPI00027659D8 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:48468185..48474570
Molecular Weight (calculated)
34748.7 Da
IEP (calculated)
7.602
GRAVY (calculated)
-0.233
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLVPPAAT DFPAVSKPTV TEPEKVDYFN LPCPIPYEEI HREALMSLKP ELFEGMRFDF TRGLNQRFSL SHSVFMGPTE LPTQSTDVVK IPTAHYEFGA
101: NFIDPKMMLF GRVMTDGRVN ARVRCELSEN LAMKANGQLT GEPHMSHGMV NFDYKGKDYR TQFQLGNGAL FGASYIQSIT PHLSLGGEVF WAGQHRKSGI
201: GYAARYNTDK MVATGQVAST GMVALGYVQK VSDKVSLASD FMYNYMSRDV TASVGYDYIL RQCRLRGKID SNGCVAAFLE ERLNMGLNFI LSAEIDHKKK
301: DYKFGFGLTV GE
101: NFIDPKMMLF GRVMTDGRVN ARVRCELSEN LAMKANGQLT GEPHMSHGMV NFDYKGKDYR TQFQLGNGAL FGASYIQSIT PHLSLGGEVF WAGQHRKSGI
201: GYAARYNTDK MVATGQVAST GMVALGYVQK VSDKVSLASD FMYNYMSRDV TASVGYDYIL RQCRLRGKID SNGCVAAFLE ERLNMGLNFI LSAEIDHKKK
301: DYKFGFGLTV GE
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.