Factsheet for Os03t0323800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0921600-01
Os02t0754500-01
Os06t0168000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	Os01t0921600-01	AT1G27390.1	17981999
AT3G20000.1	Os06t0168000-01	AT2G19080.1	17981999
AT3G20000.1	Os01t0921600-01	AT3G27080.1	17981999
AT3G20000.1	Os02t0754500-01	AT5G09420.1	17981999
AT3G20000.1	Os01t0921600-01	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94935	Sorghum	cytosol, plastid	88.43	89.49
Zm00001d028971_P001	Maize	cytosol	88.13	88.92
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	88.13	88.39
TraesCS4B01G175300.1	Wheat	cytosol	88.13	88.39
HORVU4Hr1G051720.1	Barley	cytosol	88.13	88.39
Zm00001d047566_P008	Maize	cytosol	86.94	87.99
TraesCS4A01G129200.1	Wheat	plastid	87.54	87.8
GSMUA_Achr8P01650_001	Banana	plastid	80.12	83.59
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	79.53	80.24
VIT_03s0097g00590.t01	Wine grape	cytosol	71.22	77.67
GSMUA_Achr10P...	Banana	extracellular, vacuole	41.25	73.94
KRH60449	Soybean	mitochondrion	67.06	73.38
KRH41747	Soybean	mitochondrion	67.06	72.9
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	67.36	72.76
Solyc06g007710.2.1	Tomato	plastid	67.66	72.61
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	73.89	70.94
GSMUA_Achr10P...	Banana	plastid	44.21	69.63
CDY33440	Canola	cytosol	63.5	69.03
CDY42223	Canola	cytosol	63.2	68.71
AT3G20000.1	Thale cress	cytosol	62.91	68.61
Bra038249.1-P	Field mustard	cytosol	62.91	68.39
CDY36066	Canola	cytosol	62.02	67.64
CDX82267	Canola	cytosol	61.72	67.31
PGSC0003DMT400051986	Potato	cytosol, plastid	14.54	67.12
CDY24571	Canola	cytosol	57.86	63.11
Bra035826.1-P	Field mustard	cytosol	57.57	62.78
CDY25368	Canola	cytosol	57.27	62.46
AT1G50400.1	Thale cress	cytosol	55.79	60.65
CDY37141	Canola	cytosol	48.66	51.25
Bra018846.1-P	Field mustard	cytosol	47.77	50.31
CDY22793	Canola	cytosol	47.48	50.0
Os01t0276200-00	Rice	mitochondrion	59.64	48.55

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	EntrezGene:4332694	ProteinID:ABF95692.1	EMBL:AK105342	ProteinID:BAF11889.1
ProteinID:BAS83967.1	ProteinID:EAZ26758.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810
GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150
GO:GO:0055085	InterPro:IPR023614	EnsemblPlantsGene:Os03g0323800	EnsemblPlants:Os03t0323800-01	PFAM:PF01459	PANTHER:PTHR10802
PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniProt:Q10M45	InterPro:Tom40	UniParc:UPI0000DB4210
RefSeq:XP_015627831.1	SEG:seg	:	:	:	:

Description

eukaryotic type Porin family protein, voltage-dependent anion channel 8Similar to ISP42-like protein (Fragment). (Os03t0323800-01)

Coordinates

chr3:+:11742589..11747955

Molecular Weight (calculated)

37339.6 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.316

Length

337 amino acids

Sequence
(BLAST)

001: MGSAASAAAP PPPPTAQPHM AAPPYGAGLA GILPPKPDGE EEGKKKEVEK VDYLNLPCPV PFEEIQREAL MSLKPELFEG LRFDFTKGLN QKFSLSHSVF
101: MGSLEVPSQS TETIKVPTSH YEFGANFIDP KLILVGRVMT DGRLNARVKC DLTDDLTLKI NAQLTHEPHY SQGMFNFDYK GTDYRAQFQI GNNAFYGANY
201: IQSVTPNLSM GTEIFWLGHQ RKSGIGFASR YNSDKMVGTL QVASTGIVAL SYVQKVSEKV SLASDFMYNH MSRDVTSSFG YDYMLRQCRL RGKFDSNGVV
301: AAYLEERLNM GVNFLLSAEI DHSKKNYKFG FGMTVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.