Factsheet for Os01t0276200-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 16429260
plastid: 17189339
mitochondrion: 19010998
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0921600-01
Os02t0754500-01
Os06t0168000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	Os01t0921600-01	AT1G27390.1	17981999
AT3G20000.1	Os06t0168000-01	AT2G19080.1	17981999
AT3G20000.1	Os01t0921600-01	AT3G27080.1	17981999
AT3G20000.1	Os02t0754500-01	AT5G09420.1	17981999
AT3G20000.1	Os01t0921600-01	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular, vacuole	30.43	67.02
KXG32258	Sorghum	plastid	51.93	63.8
Zm00001d008242_P001	Maize	mitochondrion	51.69	63.31
VIT_03s0097g00590.t01	Wine grape	cytosol	45.41	60.84
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	49.03	60.78
TraesCS3A01G188600.1	Wheat	cytosol	49.03	60.6
GSMUA_Achr8P01650_001	Banana	plastid	47.1	60.37
Os03t0323800-01	Rice	cytosol, mitochondrion	48.55	59.64
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	44.93	59.62
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	48.07	59.58
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	47.83	59.28
Solyc06g007710.2.1	Tomato	plastid	44.93	59.24
KRH60449	Soybean	mitochondrion	43.48	58.44
KRH41747	Soybean	mitochondrion	43.72	58.39
HORVU3Hr1G039040.6	Barley	mitochondrion	49.03	55.77
CDY36066	Canola	cytosol	41.3	55.34
CDY33440	Canola	cytosol	41.3	55.16
CDX82267	Canola	cytosol	41.06	55.02
AT3G20000.1	Thale cress	cytosol	41.06	55.02
CDY42223	Canola	cytosol	41.06	54.84
Bra038249.1-P	Field mustard	cytosol	41.06	54.84
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	46.38	54.7
CDY24571	Canola	cytosol	37.44	50.16
Bra035826.1-P	Field mustard	cytosol	37.2	49.84
CDY25368	Canola	cytosol	36.96	49.51
AT1G50400.1	Thale cress	cytosol	36.96	49.35
CDY37141	Canola	cytosol	34.3	44.38
CDY22793	Canola	cytosol	33.57	43.44
Bra018846.1-P	Field mustard	cytosol	33.57	43.44
GSMUA_Achr10P...	Banana	plastid	21.5	41.59
Zm00001d040440_P001	Maize	plastid	17.63	39.89
PGSC0003DMT400051986	Potato	cytosol, plastid	4.35	24.66

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	UniProt:A0A0P0V1K5	ProteinID:BAS71548.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	InterPro:IPR023614	EnsemblPlantsGene:Os01g0276200	EnsemblPlants:Os01t0276200-00
PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40
UniParc:UPI00039388DD	SEG:seg	:	:	:	:

Description

voltage-dependent anion channel 7, voltage-dependent anion-selective channel 7Similar to Mitochondrial import receptor subunit TOM40. (Os01t0276200-00)

Coordinates

chr1:-:9671077..9676036

Molecular Weight (calculated)

45331.6 Da

IEP (calculated)

10.776

GRAVY (calculated)

-0.530

Length

414 amino acids

Sequence
(BLAST)

001: LGYFAFTKIL SLNSGQQKIG SVYLKPKKES SPSQIQRTNP DANPTGVRRL PAPSPSTPPT PENPPKTHTT TRIRPTPSLA PPPPPPPPKS QARRHRHGRG
101: RQPRLRRGPA SPTHGLRALR GPRGRGGAAT GGEGRGGRRG EGGLHEPPLP RPLRGDPARG LHGFGCIVTI LVRLSVSMGS MELPSQGADV IKVPTSNYEF
201: GANFMDPKMM LIGRVSHDGR VTARVKCDLL ENLCLKINAQ LTNEPHYSQG MFSFDYKGKD FRSQFQLGNN AFYGGNYIQS VTKNLSLGTE AFWLGQQRKS
301: GVGFVARYDT KKMVATGQIA TTGLVSLSYV QKVSEKVSLA SDFMYNHMAK DVTASFGYDY MLRQCRLRGK IDTNGVVSAL LEERLTPGVN FVLSAELDHW
401: KKDYKFGFGM VLGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.