Factsheet for HORVU3Hr1G039040.6

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G094550.2
HORVU6Hr1G078210.1
HORVU7Hr1G027350.3
HORVU7Hr1G075380.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	HORVU3Hr1G094550.2	AT1G27390.1	17981999
AT3G20000.1	HORVU7Hr1G075380.6	AT1G27390.1	17981999
AT3G20000.1	HORVU7Hr1G027350.3	AT2G19080.1	17981999
AT3G20000.1	HORVU3Hr1G094550.2	AT3G27080.1	17981999
AT3G20000.1	HORVU7Hr1G075380.6	AT3G27080.1	17981999
AT3G20000.1	HORVU6Hr1G078210.1	AT5G09420.1	17981999
AT3G20000.1	HORVU3Hr1G094550.2	AT5G40930.1	17981999
AT3G20000.1	HORVU7Hr1G075380.6	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	80.77	88.02
TraesCS3A01G188600.1	Wheat	cytosol	80.77	87.76
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	80.22	87.43
KXG32258	Sorghum	plastid	62.36	67.36
Zm00001d008242_P001	Maize	mitochondrion	60.99	65.68
HORVU4Hr1G051720.1	Barley	cytosol	60.16	65.18
VIT_03s0097g00590.t01	Wine grape	cytosol	54.95	64.72
GSMUA_Achr8P01650_001	Banana	plastid	56.87	64.09
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	58.52	63.77
KRH60449	Soybean	mitochondrion	52.47	62.01
KRH41747	Soybean	mitochondrion	52.75	61.94
GSMUA_Achr10P...	Banana	extracellular, vacuole	31.32	60.64
Solyc06g007710.2.1	Tomato	plastid	51.92	60.19
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	51.37	59.94
CDY33440	Canola	cytosol	50.55	59.35
CDY42223	Canola	cytosol	50.27	59.03
AT1G50400.1	Thale cress	cytosol	50.27	59.03
Bra038249.1-P	Field mustard	cytosol	50.0	58.71
CDX82267	Canola	cytosol	49.45	58.25
CDY36066	Canola	cytosol	48.63	57.28
AT3G20000.1	Thale cress	cytosol	48.63	57.28
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	53.85	55.84
CDY25368	Canola	cytosol	47.25	55.66
CDY24571	Canola	cytosol	47.25	55.66
Bra035826.1-P	Field mustard	cytosol	47.25	55.66
Zm00001d040440_P001	Maize	plastid	27.75	55.19
PGSC0003DMT400051986	Potato	cytosol, plastid	10.44	52.05
GSMUA_Achr10P...	Banana	plastid	30.49	51.87
Os01t0276200-00	Rice	mitochondrion	55.77	49.03
CDY37141	Canola	cytosol	41.76	47.5
Bra018846.1-P	Field mustard	cytosol	41.21	46.88
CDY22793	Canola	cytosol	40.93	46.56

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	UniProt:A0A287KTS1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150
GO:GO:0055085	EnsemblPlantsGene:HORVU3Hr1G039040	EnsemblPlants:HORVU3Hr1G039040.6	InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802
PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI000B469424	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:228393673..228398426

Molecular Weight (calculated)

39891.2 Da

IEP (calculated)

7.676

GRAVY (calculated)

-0.457

Length

364 amino acids

Sequence
(BLAST)

001: TAQPKLASHN LRHPKSHAHR SPAAAAAAAA MGSSFSHEDA PPPPPPAPAN EPPSPYADVP PPPLPPQEED KAAEDDKVDY LNLRCPIPYE EAQREAMRTL
101: KPELFEGFRF DFVKPVSQVF FLSHSASMGS LEVPSQGPEV IKVATSNYEF GANYIDPKLM LIGRIAPDGR LSGRVKYDLT KNLCLKLNAQ LTNEPGYSQG
201: MGSLDYKGKD FRTQCQFGNN GFYGTNYIQS VTKNLSLGTE GFWLGQQSKS GVGFLARYDT KKMVATGQIA STGLVSLSYV QKVSEKVSLA TDFMYNHMSK
301: DVIASVGYDY IMRQSRLRGK VDTNGTVSAL LEERINQHAT LVLSAEVDHW KKDNKFGIGI NVGE

Best Arabidopsis Sequence Match ( AT1G50400.1 )
(BLAST)

001: MEGFSPPINT AQVDAKTKLD EKVDYSNLPC PVLYEELNRE ATMALKPELF EGFRLDYNKS LNQKFFLSHS ILMGPTEVPN PTPSSEIIKI PTANYDFGAG
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF

Arabidopsis Description

TOM40-2Probable mitochondrial import receptor subunit TOM40-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.