Factsheet for VIT_03s0097g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0103g00300.t01
VIT_12s0028g00300.t01
VIT_14s0068g02030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	VIT_11s0103g00300.t01	AT2G19080.1	17981999
AT3G20000.1	VIT_14s0068g02030.t01	AT3G27080.1	17981999
AT3G20000.1	VIT_12s0028g00300.t01	AT5G09420.1	17981999
AT3G20000.1	VIT_14s0068g02030.t01	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	87.06	86.22
KRH41747	Soybean	mitochondrion	86.41	86.13
KRH60449	Soybean	mitochondrion	85.76	86.04
Solyc06g007710.2.1	Tomato	plastid	84.79	83.44
PGSC0003DMT400051986	Potato	cytosol, plastid	18.12	76.71
CDY33440	Canola	cytosol	76.05	75.81
CDY42223	Canola	cytosol	75.4	75.16
Bra038249.1-P	Field mustard	cytosol	75.08	74.84
CDX82267	Canola	cytosol	74.76	74.76
AT3G20000.1	Thale cress	cytosol	73.46	73.46
CDY36066	Canola	cytosol	73.46	73.46
GSMUA_Achr8P01650_001	Banana	plastid	76.7	73.37
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	77.99	72.16
Zm00001d028971_P001	Maize	cytosol	77.67	71.86
EER94935	Sorghum	cytosol, plastid	77.35	71.77
Os03t0323800-01	Rice	cytosol, mitochondrion	77.67	71.22
Zm00001d047566_P008	Maize	cytosol	76.38	70.87
TraesCS4B01G175300.1	Wheat	cytosol	76.38	70.24
GSMUA_Achr10P...	Banana	extracellular, vacuole	42.72	70.21
HORVU4Hr1G051720.1	Barley	cytosol	76.05	69.94
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	75.73	69.64
TraesCS4A01G129200.1	Wheat	plastid	75.73	69.64
CDY24571	Canola	cytosol	67.31	67.31
Bra035826.1-P	Field mustard	cytosol	66.99	66.99
CDY25368	Canola	cytosol	66.99	66.99
AT1G50400.1	Thale cress	cytosol	65.37	65.16
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	71.2	62.68
KXG32258	Sorghum	plastid	68.28	62.61
Zm00001d008242_P001	Maize	mitochondrion	67.64	61.83
GSMUA_Achr10P...	Banana	plastid	41.42	59.81
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	64.4	59.58
TraesCS3A01G188600.1	Wheat	cytosol	64.4	59.4
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	63.75	58.98
CDY37141	Canola	cytosol	57.93	55.94
Bra018846.1-P	Field mustard	cytosol	56.96	55.0
HORVU3Hr1G039040.6	Barley	mitochondrion	64.72	54.95
CDY22793	Canola	cytosol	56.63	54.69
Zm00001d040440_P001	Maize	plastid	32.04	54.1
Os01t0276200-00	Rice	mitochondrion	60.84	45.41

Protein Annotations

EntrezGene:100268104	wikigene:100268104	Gene3D:2.40.160.10	MapMan:23.2.1.6	EMBL:AM434272	ProteinID:CAN64867
ProteinID:CAN64867.1	ProteinID:CBI35446	ProteinID:CBI35446.3	UniProt:D7TY71	EMBL:FN596261	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320	GO:GO:0009987
GO:GO:0015266	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	InterPro:IPR023614
EntrezGene:LOC100268104	wikigene:LOC100268104	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	TIGR:TC66403	InterPro:Tom40	UniParc:UPI00015CCF43	ArrayExpress:VIT_03s0097g00590	EnsemblPlantsGene:VIT_03s0097g00590
EnsemblPlants:VIT_03s0097g00590.t01	unigene:Vvi.12351	RefSeq:XP_002264051	RefSeq:XP_002264051.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:10992610..11002213

Molecular Weight (calculated)

34321.2 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.271

Length

309 amino acids

Sequence
(BLAST)

001: MAGFVPPPAP PAPPAPPKPD EKVDYLDLPC PIPYEEIHRE ALMSLKPELF EGMRFDFTKG LNQKFSLSHS VFMGPTEIPS QSSETIKIPT AHYEFGANFI
101: DPKLMLFGRI LTDGRLNARV KCDLTENLTL KANAQLTSEP HMSHGMVNFD YKGGDYRTQL QLGNGALFGA SYIQSVTPYL SLGGEVFWAG QHRKSGIGYA
201: ARYNTDKMVA TGQVASTGMV ALSYVQKVSE KVSLASDFMY NYMSRDVTAS FGYDYILRQC RLRGKIDSNG CTAAFLEERL NMGLNFILSA EIDHRKKDYK
301: FGFGLTVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.