Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028971_P001 | Maize | cytosol | 95.2 | 94.91 |
| EER94935 | Sorghum | cytosol, plastid | 93.09 | 93.09 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 87.99 | 86.94 |
| TraesCS4A01G129200.1 | Wheat | plastid | 86.49 | 85.71 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 86.19 | 85.42 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 85.89 | 85.12 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 85.59 | 84.82 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 78.08 | 80.5 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 78.98 | 78.74 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 70.87 | 76.38 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 42.04 | 74.47 |
| Solyc06g007710.2.1 | Tomato | plastid | 68.77 | 72.93 |
| KRH41747 | Soybean | mitochondrion | 66.67 | 71.61 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 66.97 | 71.47 |
| KRH60449 | Soybean | mitochondrion | 66.07 | 71.43 |
| AT3G20000.1 | Thale cress | cytosol | 64.26 | 69.26 |
| CDY33440 | Canola | cytosol | 63.96 | 68.71 |
| CDY42223 | Canola | cytosol | 63.66 | 68.39 |
| Bra038249.1-P | Field mustard | cytosol | 63.66 | 68.39 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 71.47 | 67.81 |
| CDY36066 | Canola | cytosol | 62.76 | 67.64 |
| CDX82267 | Canola | cytosol | 62.46 | 67.31 |
| GSMUA_Achr10P... | Banana | plastid | 42.64 | 66.36 |
| Zm00001d008242_P001 | Maize | mitochondrion | 66.07 | 65.09 |
| CDY24571 | Canola | cytosol | 57.96 | 62.46 |
| Bra035826.1-P | Field mustard | cytosol | 57.66 | 62.14 |
| CDY25368 | Canola | cytosol | 57.36 | 61.81 |
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 13.51 | 61.64 |
| AT1G50400.1 | Thale cress | cytosol | 57.06 | 61.29 |
| Zm00001d040440_P001 | Maize | plastid | 31.53 | 57.38 |
| CDY37141 | Canola | cytosol | 49.85 | 51.88 |
| Bra018846.1-P | Field mustard | cytosol | 48.95 | 50.94 |
| CDY22793 | Canola | cytosol | 48.65 | 50.62 |
Protein Annotations
| EntrezGene:100282275 | Gene3D:2.40.160.10 | MapMan:23.2.1.6 | ProteinID:AQL07007.1 | ProteinID:AQL07010.1 | ProteinID:AQL07012.1 |
| UniProt:B4FM49 | EMBL:BT038187 | EMBL:EU960294 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008320 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030150 |
| GO:GO:0055085 | InterPro:IPR023614 | PFAM:PF01459 | PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 | InterPro:Porin_Euk/Tom40 |
| InterPro:Porin_dom_sf | InterPro:Tom40 | UniParc:UPI00017B6BC7 | EnsemblPlantsGene:Zm00001d047566 | EnsemblPlants:Zm00001d047566_P008 | EnsemblPlants:Zm00001d047566_T008 |
| SEG:seg | : | : | : | : | : |
Description
Mitochondrial import receptor subunit TOM40-1
Coordinates
chr9:-:135786475..135793469
Molecular Weight (calculated)
36898.2 Da
IEP (calculated)
6.870
GRAVY (calculated)
-0.223
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVASAAAP PSPHSALPQE GAPPYGPGLA GILPQTSVGE EKKEEKVDYL NLLCPVPFEE IQREALMSLK PELFEGLRFD FTKGLNQKFS LSHSVFMGSL
101: EVPAQGSETI KVPTAHYEFG ANFLDPKLML IGRVMTDGRL NARVKCDLTD NLMLKVNAQL TQEAHYSQGM FNFDYKGSDY RAQFQIGNNA FYGANYIQSV
201: TPNLSMGTEM FWLGHQRKSG IGFACRYNTD KMVGTLQVAS TGIVALSYVQ KISEKVSLAS DFMYNHMSRD VTSSFGYDYL LRQCRLRGKI DSNGVVAAYL
301: EERLNMGVNF LLSAEIDHCK KNYKFGFGMT VGE
101: EVPAQGSETI KVPTAHYEFG ANFLDPKLML IGRVMTDGRL NARVKCDLTD NLMLKVNAQL TQEAHYSQGM FNFDYKGSDY RAQFQIGNNA FYGANYIQSV
201: TPNLSMGTEM FWLGHQRKSG IGFACRYNTD KMVGTLQVAS TGIVALSYVQ KISEKVSLAS DFMYNHMSRD VTSSFGYDYL LRQCRLRGKI DSNGVVAAYL
301: EERLNMGVNF LLSAEIDHCK KNYKFGFGMT VGE
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.