Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G20000.1 | Thale cress | cytosol | 66.77 | 66.99 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 65.16 | 65.37 |
| KRH60449 | Soybean | mitochondrion | 62.9 | 63.31 |
| KRH41747 | Soybean | mitochondrion | 62.26 | 62.26 |
| CDY37141 | Canola | cytosol | 63.23 | 61.25 |
| Solyc06g007710.2.1 | Tomato | plastid | 61.94 | 61.15 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 60.97 | 60.58 |
| Bra018846.1-P | Field mustard | cytosol | 61.61 | 59.69 |
| CDY22793 | Canola | cytosol | 61.29 | 59.38 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 60.65 | 58.2 |
| Zm00001d028971_P001 | Maize | cytosol | 62.58 | 58.08 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 62.58 | 57.74 |
| TraesCS4A01G129200.1 | Wheat | plastid | 62.58 | 57.74 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 34.84 | 57.45 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 62.26 | 57.44 |
| EER94935 | Sorghum | cytosol, plastid | 61.61 | 57.36 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 61.61 | 57.19 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 61.94 | 57.14 |
| Zm00001d047566_P008 | Maize | cytosol | 61.29 | 57.06 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 60.65 | 55.79 |
| KXG32258 | Sorghum | plastid | 58.06 | 53.41 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 57.1 | 52.99 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 56.77 | 52.54 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 56.45 | 52.4 |
| Zm00001d008242_P001 | Maize | mitochondrion | 56.77 | 52.07 |
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 12.26 | 52.05 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 59.03 | 50.27 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 55.81 | 49.29 |
| GSMUA_Achr10P... | Banana | plastid | 30.97 | 44.86 |
| Zm00001d040440_P001 | Maize | plastid | 25.81 | 43.72 |
| Os01t0276200-00 | Rice | mitochondrion | 49.35 | 36.96 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:23.2.1.6 | EntrezGene:841462 | UniProt:A0A178WB68 | ProteinID:AAD50049.2 | ProteinID:AEE32544.1 |
| ArrayExpress:AT1G50400 | EnsemblPlantsGene:AT1G50400 | RefSeq:AT1G50400 | TAIR:AT1G50400 | RefSeq:AT1G50400-TAIR-G | EnsemblPlants:AT1G50400.1 |
| TAIR:AT1G50400.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0008320 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0015266 | GO:GO:0015288 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0046930 | GO:GO:0055085 |
| InterPro:IPR023614 | RefSeq:NP_175457.1 | ProteinID:OAP15041.1 | PFAM:PF01459 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020094 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| UniProt:Q9SX55 | InterPro:Tom40 | UniParc:UPI00001630DD | : | : | : |
Description
TOM40-2Probable mitochondrial import receptor subunit TOM40-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX55]
Coordinates
chr1:+:18668010..18670576
Molecular Weight (calculated)
34474.8 Da
IEP (calculated)
5.673
GRAVY (calculated)
-0.261
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGFSPPINT AQVDAKTKLD EKVDYSNLPC PVLYEELNRE ATMALKPELF EGFRLDYNKS LNQKFFLSHS ILMGPTEVPN PTPSSEIIKI PTANYDFGAG
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.