Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plastid 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15670_001 | |
| GSMUA_Achr8P00730_001 | |
| GSMUA_Achr9P14860_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 22.9 | 67.12 |
| Zm00001d040440_P001 | Maize | plastid | 47.66 | 55.74 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 77.57 | 51.39 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 73.36 | 47.01 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 69.63 | 44.21 |
| Zm00001d028971_P001 | Maize | cytosol | 67.29 | 43.11 |
| EER94935 | Sorghum | cytosol, plastid | 66.82 | 42.94 |
| Zm00001d047566_P008 | Maize | cytosol | 66.36 | 42.64 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 66.36 | 42.26 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 66.36 | 42.26 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 66.36 | 42.26 |
| TraesCS4A01G129200.1 | Wheat | plastid | 65.89 | 41.96 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 68.22 | 41.6 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 59.81 | 41.42 |
| Solyc06g007710.2.1 | Tomato | plastid | 57.48 | 39.17 |
| KRH41747 | Soybean | mitochondrion | 56.54 | 39.03 |
| KRH60449 | Soybean | mitochondrion | 55.61 | 38.64 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 55.61 | 38.14 |
| CDY33440 | Canola | cytosol | 53.27 | 36.77 |
| CDY42223 | Canola | cytosol | 52.8 | 36.45 |
| Bra038249.1-P | Field mustard | cytosol | 52.8 | 36.45 |
| AT3G20000.1 | Thale cress | cytosol | 50.93 | 35.28 |
| CDY36066 | Canola | cytosol | 50.93 | 35.28 |
| KXG32258 | Sorghum | plastid | 55.14 | 35.01 |
| CDY24571 | Canola | cytosol | 50.47 | 34.95 |
| Bra035826.1-P | Field mustard | cytosol | 50.47 | 34.95 |
| CDY25368 | Canola | cytosol | 50.47 | 34.95 |
| CDX82267 | Canola | cytosol | 50.47 | 34.95 |
| Zm00001d008242_P001 | Maize | mitochondrion | 55.14 | 34.91 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 51.87 | 33.13 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 51.4 | 32.93 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 50.93 | 32.63 |
| AT1G50400.1 | Thale cress | cytosol | 44.86 | 30.97 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 51.87 | 30.49 |
| CDY37141 | Canola | cytosol | 40.65 | 27.19 |
| Bra018846.1-P | Field mustard | cytosol | 39.72 | 26.56 |
| CDY22793 | Canola | cytosol | 39.25 | 26.25 |
| Os01t0276200-00 | Rice | mitochondrion | 41.59 | 21.5 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 7.48 | 8.51 |
Protein Annotations
| MapMan:23.2.1.6 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008320 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0055085 | EnsemblPlantsGene:GSMUA_Achr10G05170_001 |
| EnsemblPlants:GSMUA_Achr10P05170_001 | EnsemblPlants:GSMUA_Achr10T05170_001 | UniProt:M0RFJ4 | PFAM:PF01459 | PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 |
| InterPro:Porin_Euk/Tom40 | InterPro:Tom40 | UniParc:UPI000295FD81 | SEG:seg | : | : |
Description
Mitochondrial import receptor subunit TOM40 [Source:GMGC_GENE;Acc:GSMUA_Achr10G05170_001]
Coordinates
chr10:-:14859562..14863956
Molecular Weight (calculated)
23776.6 Da
IEP (calculated)
8.241
GRAVY (calculated)
-0.315
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSVSHAAA PPPPLPSPSP PPSSVGLAAA LPPKQDEKAE PEKVDWLNLP CPIPFEEIQR EALMSLKPEL FEGLRFDFTK GLNQRFSLSH SVFMGSMEVP
101: SQSSDTLKVP TAHYEFGANF LDPKLMLVGR VLTDGRLNAR VKCDLTDNLT MKINAQLTNE PHFSQGMFNF DYKPRRWALR ASAWVNQGDR TRILGLVRSW
201: FGWLAGSIEP TKSI
101: SQSSDTLKVP TAHYEFGANF LDPKLMLVGR VLTDGRLNAR VKCDLTDNLT MKINAQLTNE PHFSQGMFNF DYKPRRWALR ASAWVNQGDR TRILGLVRSW
201: FGWLAGSIEP TKSI
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.