Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 57.89 | 21.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.89 | 21.89 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 53.95 | 20.4 |
| Solyc02g068130.2.1 | Tomato | plastid | 53.95 | 20.1 |
| KRG94268 | Soybean | nucleus | 55.26 | 20.1 |
| KRH57705 | Soybean | nucleus | 55.26 | 20.0 |
| KRH31475 | Soybean | mitochondrion | 52.63 | 19.9 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 52.63 | 19.8 |
| PGSC0003DMT400052223 | Potato | cytosol | 52.63 | 19.51 |
| PGSC0003DMT400056939 | Potato | cytosol | 42.11 | 18.93 |
| Solyc02g094140.2.1 | Tomato | cytosol | 48.68 | 18.14 |
| EES01977 | Sorghum | cytosol | 47.37 | 17.73 |
| KRG97423 | Soybean | cytosol | 50.0 | 17.51 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 44.74 | 16.75 |
| PGSC0003DMT400056935 | Potato | cytosol | 42.11 | 16.67 |
| CDY34181 | Canola | cytosol | 43.42 | 16.58 |
| Bra032980.1-P | Field mustard | cytosol | 43.42 | 16.58 |
| AT3G27080.1 | Thale cress | cytosol | 43.42 | 16.34 |
| CDY28496 | Canola | cytosol | 43.42 | 16.34 |
| AT5G40930.1 | Thale cress | cytosol | 39.47 | 16.04 |
| Bra032826.1-P | Field mustard | cytosol | 44.74 | 16.04 |
| CDY27615 | Canola | cytosol | 44.74 | 16.04 |
| CDY03918 | Canola | cytosol | 43.42 | 15.87 |
| CDX84923 | Canola | cytosol | 42.11 | 15.38 |
| Zm00001d012017_P002 | Maize | mitochondrion | 40.79 | 15.35 |
| CDY15710 | Canola | cytosol | 42.11 | 15.09 |
| Bra030044.1-P | Field mustard | cytosol | 42.11 | 14.88 |
| TraesCS3B01G467700.1 | Wheat | golgi | 40.79 | 14.83 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 40.79 | 14.76 |
| CDX90082 | Canola | cytosol | 39.47 | 14.42 |
| CDY11814 | Canola | cytosol | 39.47 | 14.42 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 39.47 | 14.35 |
| Bra010946.1-P | Field mustard | cytosol | 39.47 | 14.35 |
| AT1G27390.1 | Thale cress | cytosol | 39.47 | 14.29 |
| Zm00001d040209_P001 | Maize | cytosol | 21.05 | 9.82 |
| AT3G27070.2 | Thale cress | plasma membrane | 30.26 | 9.27 |
| CDY35747 | Canola | cytosol | 11.84 | 7.03 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 15.79 | 7.02 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 9.21 | 4.27 |
| HORVU3Hr1G094550.2 | Barley | plastid | 11.84 | 4.02 |
Protein Annotations
| MapMan:23.2.1.5 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0045040 | EnsemblPlantsGene:GSMUA_Achr8G00730_001 | EnsemblPlants:GSMUA_Achr8P00730_001 | EnsemblPlants:GSMUA_Achr8T00730_001 | UniProt:M0TLH5 |
| PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | UniParc:UPI0002966219 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G00730_001]
Coordinates
chr8:-:659291..659628
Molecular Weight (calculated)
8541.7 Da
IEP (calculated)
10.032
GRAVY (calculated)
0.175
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MMKVSSPLKQ HTHESLVRTT LFEFCFGLMS VFLCYDAPKK KKSDLKYDIL GWVILAVGIV VWVGLAKSHG PPPPPR
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.