Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P09300_001 | Banana | cytosol | 72.51 | 61.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 67.25 | 57.21 |
| EES01977 | Sorghum | cytosol | 49.12 | 41.38 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 48.54 | 40.89 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 49.71 | 40.48 |
| TraesCS3B01G467700.1 | Wheat | golgi | 49.12 | 40.19 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 49.12 | 40.19 |
| Zm00001d012017_P002 | Maize | mitochondrion | 47.37 | 40.1 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 46.78 | 39.6 |
| Zm00001d040209_P001 | Maize | cytosol | 37.43 | 39.26 |
| HORVU3Hr1G094550.2 | Barley | plastid | 36.26 | 27.68 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 21.64 | 22.56 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 7.02 | 15.79 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 |
| EnsemblPlantsGene:GSMUA_Achr8G00740_001 | EnsemblPlants:GSMUA_Achr8P00740_001 | EnsemblPlants:GSMUA_Achr8T00740_001 | InterPro:IPR011990 | UniProt:M0TLH6 | PFAM:PD102047 |
| PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000295ED9A | SEG:seg | : | : | : | : |
Description
Mitochondrial import receptor subunit TOM20 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00740_001]
Coordinates
chr8:-:664361..665271
Molecular Weight (calculated)
19647.0 Da
IEP (calculated)
4.546
GRAVY (calculated)
-0.214
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQQNDFDR LLFFEHARKT AEAAYASNPL DADNLTRWGG ALLELSSFQS GDDSIKMVKD AISKLEAALE VNPSKHDTLW CLGNAHTSHA FFTQDRETAM
101: GYFDKATQCF QQALELDPGN ELYLKSLDLS SKVYIYNQLH ILRQYCVNWF TELFYLYYSA FAFFFSLSAI D
101: GYFDKATQCF QQALELDPGN ELYLKSLDLS SKVYIYNQLH ILRQYCVNWF TELFYLYYSA FAFFFSLSAI D
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.