Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plastid, plasma membrane, mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 23198870 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01977 | Sorghum | cytosol | 92.12 | 92.12 |
| Zm00001d012017_P002 | Maize | mitochondrion | 85.71 | 86.14 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 74.88 | 75.25 |
| TraesCS3B01G467700.1 | Wheat | golgi | 67.98 | 66.03 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 67.49 | 65.24 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 67.0 | 65.07 |
| Zm00001d040209_P001 | Maize | cytosol | 51.23 | 63.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.13 | 58.71 |
| Solyc02g068130.2.1 | Tomato | plastid | 57.14 | 56.86 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 56.16 | 56.72 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 55.66 | 56.22 |
| KRG94268 | Soybean | nucleus | 54.68 | 53.11 |
| PGSC0003DMT400052223 | Potato | cytosol | 53.2 | 52.68 |
| Solyc02g094140.2.1 | Tomato | cytosol | 51.72 | 51.47 |
| KRH57705 | Soybean | nucleus | 53.2 | 51.43 |
| PGSC0003DMT400056939 | Potato | cytosol | 42.36 | 50.89 |
| KRH31475 | Soybean | mitochondrion | 50.25 | 50.75 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 40.89 | 48.54 |
| AT1G27390.1 | Thale cress | cytosol | 49.26 | 47.62 |
| AT5G40930.1 | Thale cress | cytosol | 43.84 | 47.59 |
| KRG97423 | Soybean | cytosol | 50.74 | 47.47 |
| CDX84923 | Canola | cytosol | 47.29 | 46.15 |
| PGSC0003DMT400056935 | Potato | cytosol | 43.35 | 45.83 |
| CDY27615 | Canola | cytosol | 47.29 | 45.28 |
| Bra032826.1-P | Field mustard | cytosol | 47.29 | 45.28 |
| CDY34181 | Canola | cytosol | 44.34 | 45.23 |
| Bra032980.1-P | Field mustard | cytosol | 44.34 | 45.23 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 16.75 | 44.74 |
| CDY28496 | Canola | cytosol | 43.84 | 44.06 |
| CDY11814 | Canola | cytosol | 44.83 | 43.75 |
| AT3G27080.1 | Thale cress | cytosol | 43.35 | 43.56 |
| CDY03918 | Canola | cytosol | 44.34 | 43.27 |
| Bra010946.1-P | Field mustard | cytosol | 44.34 | 43.06 |
| CDX90082 | Canola | cytosol | 42.86 | 41.83 |
| CDY15710 | Canola | cytosol | 43.35 | 41.51 |
| Bra030044.1-P | Field mustard | cytosol | 43.35 | 40.93 |
| HORVU3Hr1G094550.2 | Barley | plastid | 36.45 | 33.04 |
| CDY35747 | Canola | cytosol | 19.7 | 31.25 |
| AT3G27070.2 | Thale cress | plasma membrane | 33.99 | 27.82 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100281827 | MapMan:23.2.1.5 | UniProt:B6SZD1 | EMBL:BT064993 | EMBL:EU958096 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 | ProteinID:ONM35053.1 |
| PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000182C7FD | EnsemblPlantsGene:Zm00001d042329 | EnsemblPlants:Zm00001d042329_P001 | EnsemblPlants:Zm00001d042329_T001 | SEG:seg |
Description
Mitochondrial import receptor subunit TOM20-4
Coordinates
chr3:-:161487765..161493201
Molecular Weight (calculated)
22417.4 Da
IEP (calculated)
4.584
GRAVY (calculated)
-0.416
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMGGMSDAE RLFFFEMACK NSEVAYEQNP NDADNLTRWG GALLELSQVR TGPDSLKLLE DAEAKLEEAL QIDPNKSDAL WCLGNAQTSH GFFTPDNAIA
101: NEFFTKATGC FQKAVDVEPA NELYRKSLDL SMKAPELHLE IQRQMVSQAA TQASSASNPR QSRKKKDNDF WYDVCGWVIL GAGIVAWVGL ARASMPPPTP
201: PAR
101: NEFFTKATGC FQKAVDVEPA NELYRKSLDL SMKAPELHLE IQRQMVSQAA TQASSASNPR QSRKKKDNDF WYDVCGWVIL GAGIVAWVGL ARASMPPPTP
201: PAR
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.