Factsheet for Zm00001d011569_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005653_P001
Zm00001d016570_P001
Zm00001d017768_P006
Zm00001d020233_P001
Zm00001d020667_P001
Zm00001d032283_P004
Zm00001d038964_P001
Zm00001d050563_P001
Zm00001d051562_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT2G31040.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT2G31040.1	Zm00001d005653_P001	AT2G46550.1	21798944
AT2G31040.1	Zm00001d020233_P001	AT2G46550.1	21798944
AT2G31040.1	Zm00001d032283_P004	AT2G46550.1	21798944
AT2G31040.1	Zm00001d017768_P006	AT3G50910.1	21798944
AT2G31040.1	Zm00001d020667_P001	AT3G50910.1	21798944
AT2G31040.1	Zm00001d038964_P001	AT3G50910.1	21798944
AT2G31040.1	Zm00001d051562_P001	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33095	Sorghum	mitochondrion, plastid	93.7	92.93
Os01t0673800-01	Rice	mitochondrion	84.11	84.34
TraesCS3D01G271200.1	Wheat	mitochondrion	72.05	72.65
TraesCS3B01G305300.1	Wheat	mitochondrion	72.05	72.65
TraesCS3A01G271600.2	Wheat	mitochondrion	70.96	71.55
GSMUA_Achr8P27290_001	Banana	plastid	58.63	61.67
VIT_12s0028g02170.t01	Wine grape	plastid	56.16	60.65
KRH55746	Soybean	plastid	52.6	57.31
Bra021688.1-P	Field mustard	plastid	50.96	55.03
Solyc12g010870.1.1	Tomato	plastid	51.51	54.97
PGSC0003DMT400020320	Potato	plastid	50.96	54.87
CDX97768	Canola	plastid	50.68	54.73
Solyc07g055050.2.1	Tomato	plastid	50.41	54.44
CDY58985	Canola	plastid	50.14	54.14
PGSC0003DMT400052662	Potato	plastid	49.86	53.85
AT2G31040.1	Thale cress	plastid	50.14	52.29
CDX84806	Canola	extracellular, plasma membrane, plastid	12.88	40.17
HORVU1Hr1G066500.1	Barley	plastid	16.71	34.86

Protein Annotations

EnsemblPlants:Zm00001d011569_P001	EnsemblPlants:Zm00001d011569_T001	EnsemblPlantsGene:Zm00001d011569	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	ProteinID:AQK97249.1
SEG:seg	UniParc:UPI0002211285	UniProt:K7V4E4	MapMan:1.1.9.3.1	:	:

Description

ATP synthase protein I -related

Coordinates

chr8:-:154611911..154620158

Molecular Weight (calculated)

39475.5 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.134

Length

365 amino acids

Sequence
(BLAST)

001: MSLLAVASST RAAAVRPLCA SAASDEAVPA PAVADTAGRR PVKVILPKKK PQKWSTGMAP GEYGGGPATI KPRKYWWGKE DRDPVGNTDD FIWNKDFLPH
101: MERVIANGGA DAEPTITRLA PVDEEGESGF LSINRAMSLD SVEVDLSQEL QAPTRPILQT QVEAAWRGRA IGAEAVNGAS APRWRLVPTR REQAKWDRAA
201: KAATGGSDVI LRESKSRVQQ GDPKVLAARS REDYLQLKQR LQWFTLGIGG VGVISAYISY TPEIAVSFGA GLIGSLVYLR MLGTSIDSLA GGTGETVKSA
301: AAQPRLLIPV VLVMMYNRWN QILVPDYGFM QLELIPMLVG FFTYKIATFA QAIQDSIPPV GNREG

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.