Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020667_P001 | Maize | nucleus | 26.11 | 93.23 |
| OQU85551 | Sorghum | cytosol, plastid | 81.68 | 85.65 |
| Zm00001d051562_P001 | Maize | plastid | 75.79 | 81.63 |
| Zm00001d038964_P001 | Maize | nucleus | 67.37 | 75.29 |
| Os02t0704600-01 | Rice | nucleus | 67.16 | 69.96 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 62.74 | 65.93 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 62.74 | 65.64 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 61.89 | 65.48 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 62.32 | 64.63 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 38.74 | 46.7 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 40.63 | 46.39 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 37.68 | 43.66 |
| Bra037167.1-P | Field mustard | mitochondrion | 18.74 | 42.18 |
| Bra036850.1-P | Field mustard | plastid | 35.37 | 40.48 |
| CDX73773 | Canola | cytosol | 34.53 | 39.81 |
| CDX77962 | Canola | nucleus, plastid | 34.74 | 39.76 |
| CDX90677 | Canola | nucleus | 33.47 | 38.97 |
| Bra012880.1-P | Field mustard | nucleus | 33.05 | 38.48 |
| CDY28989 | Canola | nucleus | 33.68 | 38.19 |
| KRH08190 | Soybean | nucleus | 34.53 | 37.61 |
| CDY18608 | Canola | nucleus | 27.58 | 36.09 |
| AT3G50910.1 | Thale cress | cytosol | 33.89 | 36.02 |
| KRH76747 | Soybean | plastid | 31.16 | 33.95 |
| AT5G66480.1 | Thale cress | plastid | 31.58 | 33.78 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 34.32 | 32.73 |
| KRH28715 | Soybean | cytosol | 28.21 | 32.68 |
| Solyc02g085000.2.1 | Tomato | nucleus | 31.37 | 32.25 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 32.21 | 31.81 |
| CDY67893 | Canola | nucleus | 21.89 | 30.14 |
| KRH69884 | Soybean | nucleus | 31.79 | 20.86 |
Protein Annotations
| EnsemblPlants:Zm00001d017768_P006 | EnsemblPlants:Zm00001d017768_T006 | EnsemblPlantsGene:Zm00001d017768 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR35490 | ProteinID:AQK73995.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000844B59B |
| UniProt:A0A1D6HHI6 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:206249315..206254072
Molecular Weight (calculated)
52033.7 Da
IEP (calculated)
4.793
GRAVY (calculated)
-0.630
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTITHYVLD PFLETGSPAQ AEKATPKPPP SPPDKATPVP VAPIRAQTSP ASLYATPEST TLPDSPSSFP GTWSPYIINH KRRGASLAKT VPQGDVGSEG
101: SQPKLPVILP ALPKGGEPTA VEEPEFAFQQ SGNDQAEGDS GVDEAPINGK NEMLLKGKGP VTAKNEHEQP EFEFHRGNLE ALVRPVNVGR PLIGGAPKND
201: ESDTFLELQD SMSVASNTET DDAGTQEWWW KPSSPLGISV GTPCAEFYDA FEEISSDGGT RSSRAMDDDL REMRLSLLTE IERRKQAEET LEIWQKEWKK
301: LSHHLSHVAL SLPSPSIAED TDDSSVDPGA ELCQQITVSQ LVAAAISQDF ARAEVASEME AVIATKNFEI ARLSDRVQYY EAANREMSQR NQEAIETSRQ
401: QRKERKKRQK WFWGSVGLAV TLGATAIAWS YLPSSQPRAS ADSNSTVIQK PNKPLTILLE EKKKTLYKFS FGDRP
101: SQPKLPVILP ALPKGGEPTA VEEPEFAFQQ SGNDQAEGDS GVDEAPINGK NEMLLKGKGP VTAKNEHEQP EFEFHRGNLE ALVRPVNVGR PLIGGAPKND
201: ESDTFLELQD SMSVASNTET DDAGTQEWWW KPSSPLGISV GTPCAEFYDA FEEISSDGGT RSSRAMDDDL REMRLSLLTE IERRKQAEET LEIWQKEWKK
301: LSHHLSHVAL SLPSPSIAED TDDSSVDPGA ELCQQITVSQ LVAAAISQDF ARAEVASEME AVIATKNFEI ARLSDRVQYY EAANREMSQR NQEAIETSRQ
401: QRKERKKRQK WFWGSVGLAV TLGATAIAWS YLPSSQPRAS ADSNSTVIQK PNKPLTILLE EKKKTLYKFS FGDRP
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.