Factsheet for Zm00001d033634_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0701300-00	Rice	cytosol, vacuole	45.65	84.85
OQU91145	Sorghum	plastid	79.35	81.56
HORVU4Hr1G006090.1	Barley	plastid	64.13	69.01
TraesCS4A01G275200.1	Wheat	plastid	65.76	67.98
TraesCS4D01G035600.1	Wheat	plastid	65.22	67.42
TraesCS4B01G038700.1	Wheat	plastid	64.13	66.67
Bra018531.1-P	Field mustard	cytosol, plastid, vacuole	34.24	64.95
GSMUA_Achr4P16580_001	Banana	plastid	47.83	49.16
VIT_07s0151g00950.t01	Wine grape	plastid	44.02	47.93
AT4G02725.1	Thale cress	plastid	42.39	47.27
CDX97285	Canola	plastid	42.39	46.99
CDX91314	Canola	plastid	42.39	46.99
KRH67228	Soybean	plastid	41.85	46.39
CDY22076	Canola	plastid	40.22	46.25
CDY21914	Canola	plastid	40.22	45.96
PGSC0003DMT400049761	Potato	plastid	36.41	43.23
Solyc09g065300.2.1	Tomato	plastid	45.11	39.71
Bra036243.1-P	Field mustard	plastid	26.09	38.71

Protein Annotations

EnsemblPlants:Zm00001d033634_P001	EnsemblPlants:Zm00001d033634_T001	EnsemblPlantsGene:Zm00001d033634	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36046
ProteinID:ONM08188.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000221A94C	UniProt:A0A1D6L0Y0	MapMan:35.2

Description

Whole genome shotgun sequence of line PN40024 scaffold_151.assembly12x (Fragment)

Coordinates

chr1:+:269328065..269330035

Molecular Weight (calculated)

19593.2 Da

IEP (calculated)

5.184

GRAVY (calculated)

0.016

Length

184 amino acids

Sequence
(BLAST)

001: MGALCLLYPS TPPRCPCGAR ADATAAFAPS PFLSSCAATG AQTRLQLCGR SQRRGGVARV GGGGGGGKGE SGKNGAAAFF DEDGVVDDMD GYLNYLSLEY
101: DSVWDTKPAW CQPWTILLTG TGAVACSWVL IQSVVITAGV SFVISAWWYI FLYSYPKAYT EMIAERRRNV ASGAEDTYGM EKIQ

Best Arabidopsis Sequence Match ( AT4G02725.1 )
(BLAST)

001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS

Arabidopsis Description

At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.