Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036243.1-P | Field mustard | plastid | 73.12 | 94.35 |
| CDY21914 | Canola | plastid | 93.75 | 93.17 |
| AT4G02725.1 | Thale cress | plastid | 80.62 | 78.18 |
| CDX91314 | Canola | plastid | 80.62 | 77.71 |
| CDX97285 | Canola | plastid | 79.38 | 76.51 |
| Os03t0701300-00 | Rice | cytosol, vacuole | 38.75 | 62.63 |
| KRH67228 | Soybean | plastid | 53.12 | 51.2 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 52.5 | 49.7 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 50.62 | 45.25 |
| HORVU4Hr1G006090.1 | Barley | plastid | 45.0 | 42.11 |
| OQU91145 | Sorghum | plastid | 45.62 | 40.78 |
| PGSC0003DMT400049761 | Potato | plastid | 39.38 | 40.65 |
| TraesCS4A01G275200.1 | Wheat | plastid | 45.0 | 40.45 |
| TraesCS4D01G035600.1 | Wheat | plastid | 45.0 | 40.45 |
| Zm00001d033634_P001 | Maize | plastid | 46.25 | 40.22 |
| TraesCS4B01G038700.1 | Wheat | plastid | 44.38 | 40.11 |
| Solyc09g065300.2.1 | Tomato | plastid | 48.75 | 37.32 |
Protein Annotations
| EnsemblPlants:CDY22076 | EnsemblPlantsGene:GSBRNA2T00018461001 | GO:A0A078G9L0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36046 | ProteinID:CDY22076 | ProteinID:CDY22076.1 | TMHMM:TMhelix | UniParc:UPI0004EE4ADA | UniProt:A0A078G9L0 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA09g01050DBnaA09g01050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9L0]
Coordinates
chrLK032127:+:448333..449212
Molecular Weight (calculated)
18297.8 Da
IEP (calculated)
7.408
GRAVY (calculated)
-0.203
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLSISTVP LSPFRLQTQT RISTLSTRTN LHSFNLNPTR TVSKVRGLRE ENDSRFVDED GAVDDMEGYL GNLSLEYDSV WDTKPSWCQP WTIMLTGLSI
101: VTCSWLILHS VLVSSLAIGL VGAWWYIFLY SYPKSYSEMI AERRKRVADG FEDIYGKNKT
101: VTCSWLILHS VLVSSLAIGL VGAWWYIFLY SYPKSYSEMI AERRKRVADG FEDIYGKNKT
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.