Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G275200.1 | Wheat | plastid | 91.53 | 91.01 |
| HORVU4Hr1G006090.1 | Barley | plastid | 86.44 | 89.47 |
| TraesCS4D01G035600.1 | Wheat | plastid | 89.83 | 89.33 |
| Os03t0701300-00 | Rice | cytosol, vacuole | 48.59 | 86.87 |
| OQU91145 | Sorghum | plastid | 66.67 | 65.92 |
| Zm00001d033634_P001 | Maize | plastid | 66.67 | 64.13 |
| Bra018531.1-P | Field mustard | cytosol, plastid, vacuole | 34.46 | 62.89 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 48.02 | 50.3 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 50.85 | 50.28 |
| KRH67228 | Soybean | plastid | 45.2 | 48.19 |
| AT4G02725.1 | Thale cress | plastid | 42.94 | 46.06 |
| PGSC0003DMT400049761 | Potato | plastid | 39.55 | 45.16 |
| CDY21914 | Canola | plastid | 40.68 | 44.72 |
| CDY22076 | Canola | plastid | 40.11 | 44.38 |
| CDX97285 | Canola | plastid | 40.68 | 43.37 |
| CDX91314 | Canola | plastid | 40.68 | 43.37 |
| Solyc09g065300.2.1 | Tomato | plastid | 49.15 | 41.63 |
| Bra036243.1-P | Field mustard | plastid | 25.99 | 37.1 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G038700.1 | EnsemblPlantsGene:TraesCS4B01G038700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | PANTHER:PTHR36046 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr4B:-:27797399..27799794
Molecular Weight (calculated)
19185.9 Da
IEP (calculated)
8.706
GRAVY (calculated)
-0.126
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALCLLPST PRSCSGRGLA SSPRPPRPAA ALHLPPSASP SQRPQLAAAG GRRFAGVSRA RGEKGGKNGG AEFFREDGVV DDMDGYLNYL SLEYDSVWDT
101: KPAWCQPWTI LLTGTVAVAC SWVLIHSAVI TGGVSFVICA WWYIFLYSYP KAYTDMISER RKKVASGAED TYGMEKM
101: KPAWCQPWTI LLTGTVAVAC SWVLIHSAVI TGGVSFVICA WWYIFLYSYP KAYTDMISER RKKVASGAED TYGMEKM
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.