Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0701300-00 | Rice | cytosol, vacuole | 44.38 | 75.76 |
| Bra018531.1-P | Field mustard | cytosol, plastid, vacuole | 37.87 | 65.98 |
| KRH67228 | Soybean | plastid | 57.4 | 58.43 |
| AT4G02725.1 | Thale cress | plastid | 52.07 | 53.33 |
| CDY22076 | Canola | plastid | 49.7 | 52.5 |
| PGSC0003DMT400049761 | Potato | plastid | 47.34 | 51.61 |
| CDY21914 | Canola | plastid | 49.11 | 51.55 |
| HORVU4Hr1G006090.1 | Barley | plastid | 51.48 | 50.88 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 53.25 | 50.28 |
| TraesCS4D01G035600.1 | Wheat | plastid | 51.48 | 48.88 |
| CDX91314 | Canola | plastid | 47.93 | 48.8 |
| TraesCS4A01G275200.1 | Wheat | plastid | 50.89 | 48.31 |
| CDX97285 | Canola | plastid | 47.34 | 48.19 |
| OQU91145 | Sorghum | plastid | 50.89 | 48.04 |
| TraesCS4B01G038700.1 | Wheat | plastid | 50.3 | 48.02 |
| Bra036243.1-P | Field mustard | plastid | 34.91 | 47.58 |
| Solyc09g065300.2.1 | Tomato | plastid | 58.58 | 47.37 |
| Zm00001d033634_P001 | Maize | plastid | 47.93 | 44.02 |
Protein Annotations
| EntrezGene:100244184 | wikigene:100244184 | MapMan:35.2 | ProteinID:CBI28702 | ProteinID:CBI28702.3 | UniProt:D7TDX9 |
| EMBL:FN595764 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100244184 | wikigene:LOC100244184 | PANTHER:PTHR36046 |
| TMHMM:TMhelix | UniParc:UPI00015CA44E | ArrayExpress:VIT_07s0151g00950 | EnsemblPlantsGene:VIT_07s0151g00950 | EnsemblPlants:VIT_07s0151g00950.t01 | RefSeq:XP_002272980 |
| RefSeq:XP_002272980.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:1158692..1161598
Molecular Weight (calculated)
19189.0 Da
IEP (calculated)
7.433
GRAVY (calculated)
-0.124
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MEALSRFPLS FPCLLPPHQS PSQTHFSNSI FSPKISSTTR KPPISRRETV AIAANPNDPK ESVFMDENGA VDDMDGYLNY LSLEYDSVWD TKPSWCQPWT
101: IMLTGVSVIA CSWLILHSAV ITSLVLSVIS LWWYIFLYSY PKAYSDMIAE RRKKVTRGVE DTFGLKKSQ
101: IMLTGVSVIA CSWLILHSAV ITSLVLSVIS LWWYIFLYSY PKAYSDMIAE RRKKVTRGVE DTFGLKKSQ
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.