Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036243.1-P | Field mustard | plastid | 73.29 | 95.16 |
| CDY22076 | Canola | plastid | 93.17 | 93.75 |
| CDX91314 | Canola | plastid | 82.61 | 80.12 |
| CDX97285 | Canola | plastid | 81.37 | 78.92 |
| AT4G02725.1 | Thale cress | plastid | 80.75 | 78.79 |
| Os03t0701300-00 | Rice | cytosol, vacuole | 37.89 | 61.62 |
| KRH67228 | Soybean | plastid | 52.8 | 51.2 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 51.55 | 49.11 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 49.07 | 44.13 |
| HORVU4Hr1G006090.1 | Barley | plastid | 45.34 | 42.69 |
| TraesCS4D01G035600.1 | Wheat | plastid | 45.34 | 41.01 |
| TraesCS4A01G275200.1 | Wheat | plastid | 45.34 | 41.01 |
| OQU91145 | Sorghum | plastid | 45.34 | 40.78 |
| TraesCS4B01G038700.1 | Wheat | plastid | 44.72 | 40.68 |
| Zm00001d033634_P001 | Maize | plastid | 45.96 | 40.22 |
| PGSC0003DMT400049761 | Potato | plastid | 38.51 | 40.0 |
| Solyc09g065300.2.1 | Tomato | plastid | 47.83 | 36.84 |
Protein Annotations
| EnsemblPlants:CDY21914 | EnsemblPlantsGene:GSBRNA2T00018240001 | GO:A0A078G955 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36046 | ProteinID:CDY21914 | ProteinID:CDY21914.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDBFD3 |
| UniProt:A0A078G955 | MapMan:35.2 | : | : | : | : |
Description
BnaC09g00200DBnaC09g00200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G955]
Coordinates
chrLK032126:+:88358..89233
Molecular Weight (calculated)
18307.8 Da
IEP (calculated)
7.340
GRAVY (calculated)
-0.165
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLSISTVP LSPFRLQTQT RISTLSSRAN LHSCNLNPTR TVSKVRGLRE ENDSRFVDEN GAVDDMEGYL DNLSLEYDSV WDTKPSWCQP WTIMVTGLSI
101: VACSWVILHS VLVSSLAVGL VGAWWYIFLY SYPKSYLEMI AERRKRVADG FEDIYGKNKT S
101: VACSWVILHS VLVSSLAVGL VGAWWYIFLY SYPKSYLEMI AERRKRVADG FEDIYGKNKT S
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.