Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0701300-00 | Rice | cytosol, vacuole | 40.22 | 72.73 |
| Bra018531.1-P | Field mustard | cytosol, plastid, vacuole | 36.31 | 67.01 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 50.28 | 53.25 |
| HORVU4Hr1G006090.1 | Barley | plastid | 50.28 | 52.63 |
| KRH67228 | Soybean | plastid | 48.6 | 52.41 |
| TraesCS4A01G275200.1 | Wheat | plastid | 51.96 | 52.25 |
| TraesCS4D01G035600.1 | Wheat | plastid | 51.4 | 51.69 |
| TraesCS4B01G038700.1 | Wheat | plastid | 50.28 | 50.85 |
| CDY22076 | Canola | plastid | 45.25 | 50.62 |
| AT4G02725.1 | Thale cress | plastid | 45.81 | 49.7 |
| CDY21914 | Canola | plastid | 44.13 | 49.07 |
| CDX91314 | Canola | plastid | 45.25 | 48.8 |
| CDX97285 | Canola | plastid | 45.25 | 48.8 |
| OQU91145 | Sorghum | plastid | 48.04 | 48.04 |
| Zm00001d033634_P001 | Maize | plastid | 49.16 | 47.83 |
| Bra036243.1-P | Field mustard | plastid | 30.73 | 44.35 |
| PGSC0003DMT400049761 | Potato | plastid | 36.87 | 42.58 |
| Solyc09g065300.2.1 | Tomato | plastid | 45.25 | 38.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P16580_001 | EnsemblPlants:GSMUA_Achr4T16580_001 | EnsemblPlantsGene:GSMUA_Achr4G16580_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36046 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000296D2B9 | UniProt:M0SPH2 | MapMan:35.2 | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_151.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G16580_001]
Coordinates
chr4:-:15050588..15055848
Molecular Weight (calculated)
20012.8 Da
IEP (calculated)
9.087
GRAVY (calculated)
-0.225
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVRSLPIS SVSYLLRGRP ALPSKPPSNS ISTSFFTRRK RRPSPAGSAP ARGPRESFRI SSNVNGEKAD ESRFFDEDGV VEDMDGYLNY LSLEYDSVWD
101: TKPSWCQPWT ILLTGVAVVA CSWTILHSAA ISVGLSILIC GWWYIFLYAY PKAYSNMIAE RRKRVSSGIE DTFGIEKKG
101: TKPSWCQPWT ILLTGVAVVA CSWTILHSAA ISVGLSILIC GWWYIFLYAY PKAYSNMIAE RRKRVSSGIE DTFGIEKKG
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.