Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G088900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | HORVU7Hr1G088900.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G035600.1 | Wheat | plastid | 95.91 | 92.13 |
| TraesCS4A01G275200.1 | Wheat | plastid | 95.91 | 92.13 |
| Os03t0701300-00 | Rice | cytosol, vacuole | 50.29 | 86.87 |
| TraesCS4B01G038700.1 | Wheat | plastid | 89.47 | 86.44 |
| OQU91145 | Sorghum | plastid | 70.18 | 67.04 |
| Zm00001d033634_P001 | Maize | plastid | 69.01 | 64.13 |
| Bra018531.1-P | Field mustard | cytosol, plastid, vacuole | 35.67 | 62.89 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 50.88 | 51.48 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 52.63 | 50.28 |
| KRH67228 | Soybean | plastid | 46.2 | 47.59 |
| AT4G02725.1 | Thale cress | plastid | 44.44 | 46.06 |
| PGSC0003DMT400049761 | Potato | plastid | 41.52 | 45.81 |
| CDY21914 | Canola | plastid | 42.69 | 45.34 |
| CDY22076 | Canola | plastid | 42.11 | 45.0 |
| CDX97285 | Canola | plastid | 43.27 | 44.58 |
| CDX91314 | Canola | plastid | 43.27 | 44.58 |
| Solyc09g065300.2.1 | Tomato | plastid | 50.88 | 41.63 |
| Bra036243.1-P | Field mustard | plastid | 27.49 | 37.9 |
Protein Annotations
| EMBL:AK356335 | EnsemblPlants:HORVU4Hr1G006090.1 | EnsemblPlantsGene:HORVU4Hr1G006090 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36046 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002004D5D | UniProt:F2CXI2 | MapMan:35.2 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CXI2]
Coordinates
chrchr4H:-:14597509..14600465
Molecular Weight (calculated)
18534.2 Da
IEP (calculated)
8.191
GRAVY (calculated)
-0.101
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALCLLPST PPSCSPRPHG PTAALPLPPS ASPWPRPRLA AGGGRRRLAG VARGSGEKGG KNGGAEFFRE DGVVDDMDGY LNYLSLEYDS VWDTKPAWCQ
101: PWTILLTGTV AVACSWVLIH SAVITGGVSF VICAWWYIFL YSYPKAYTDM ISERRKKVAS GAEDTYGMEK M
101: PWTILLTGTV AVACSWVLIH SAVITGGVSF VICAWWYIFL YSYPKAYTDM ISERRKKVAS GAEDTYGMEK M
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.