Factsheet for PGSC0003DMT400049761

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02725.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT4G02725.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065300.2.1	Tomato	plastid	80.65	59.81
Os03t0701300-00	Rice	cytosol, vacuole	35.48	55.56
Bra018531.1-P	Field mustard	cytosol, plastid, vacuole	30.97	49.48
VIT_07s0151g00950.t01	Wine grape	plastid	51.61	47.34
KRH67228	Soybean	plastid	45.81	42.77
CDX91314	Canola	plastid	45.16	42.17
CDX97285	Canola	plastid	44.52	41.57
HORVU4Hr1G006090.1	Barley	plastid	45.81	41.52
Bra036243.1-P	Field mustard	plastid	32.9	41.13
TraesCS4A01G275200.1	Wheat	plastid	46.45	40.45
TraesCS4D01G035600.1	Wheat	plastid	46.45	40.45
AT4G02725.1	Thale cress	plastid	42.58	40.0
TraesCS4B01G038700.1	Wheat	plastid	45.16	39.55
CDY22076	Canola	plastid	40.65	39.38
OQU91145	Sorghum	plastid	44.52	38.55
CDY21914	Canola	plastid	40.0	38.51
GSMUA_Achr4P16580_001	Banana	plastid	42.58	36.87
Zm00001d033634_P001	Maize	plastid	43.23	36.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400049761	EnsemblPlantsGene:PGSC0003DMG400019331	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36046	PGSC:PGSC0003DMG400019331
SEG:seg	TMHMM:TMhelix	UniParc:UPI000295BEE0	UniProt:M1BPA3	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019331]

Coordinates

chr9:-:47764158..47768606

Molecular Weight (calculated)

17497.9 Da

IEP (calculated)

7.625

GRAVY (calculated)

0.090

Length

155 amino acids

Sequence
(BLAST)

001: MIAAQSLSSS VLLPLLCPTP PVHRRVARSQ LSDIEFSSKL PSITFLSAHK FSKRTRTSTV RGINSNDPKE SAFFDENGVV EDMDSYLNHL SLEYDSVWDT
101: KPSWCQPWTI TLTGTVIISL SWLILHSAVA TAVVMTTIAA WWYIFLYSYP KVNHF

Best Arabidopsis Sequence Match ( AT4G02725.2 )
(BLAST)

001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKV

Arabidopsis Description

At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.